Paket: libseqlib2 (1.2.0+dfsg-11 och andra)

[ Källkod: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Märken: Role: Shared Library

Andra paket besläktade med libseqlib2

• dep: libc6 (>= 2.38) [ej alpha, ia64, sh4]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libfml0 (>= 0.1+git20190320.b499514)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC stödbibliotek

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libjsoncpp25 (>= 1.9.5) [ia64]

  library for reading and writing JSON for C++

• dep: libjsoncpp26 (>= 1.9.6) [ej ia64]

  library for reading and writing JSON for C++

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4) [ej armel, armhf, m68k, sh4]

  Kompressionsbibliotek - körtidspaket

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, m68k, sh4]

Hämta libseqlib2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.2.0+dfsg-11+b2	150,7 kbyte	537,0 kbyte	[filförteckning]
amd64	1.2.0+dfsg-11+b3	168,1 kbyte	564,0 kbyte	[filförteckning]
arm64	1.2.0+dfsg-11+b3	143,3 kbyte	533,0 kbyte	[filförteckning]
armel	1.2.0+dfsg-11+b3	135,4 kbyte	467,0 kbyte	[filförteckning]
armhf	1.2.0+dfsg-11+b3	138,4 kbyte	339,0 kbyte	[filförteckning]
i386	1.2.0+dfsg-11+b3	177,6 kbyte	511,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.2.0+dfsg-11+b1	192,3 kbyte	885,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.2.0+dfsg-11+b3	150,6 kbyte	467,0 kbyte	[filförteckning]
mips64el	1.2.0+dfsg-11+b3	145,4 kbyte	556,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.2.0+dfsg-11+b3	165,5 kbyte	661,0 kbyte	[filförteckning]
ppc64el	1.2.0+dfsg-11+b3	167,0 kbyte	597,0 kbyte	[filförteckning]
riscv64	1.2.0+dfsg-11+b3	156,6 kbyte	396,0 kbyte	[filförteckning]
s390x	1.2.0+dfsg-11+b3	157,8 kbyte	512,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.2.0+dfsg-11+b3	182,0 kbyte	470,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.2.0+dfsg-11+b3	129,5 kbyte	1.059,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.2.0+dfsg-11+b3	165,0 kbyte	475,0 kbyte	[filförteckning]