Pakket: r-bioc-variantannotation (1.50.0-1 en anderen)

[ Bron: r-bioc-variantannotation  ]

BioConductor annotation of genetic variants

This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes.

Andere aan r-bioc-variantannotation gerelateerde pakketten

• dep: libbz2-1.0 [niet hppa, m68k, sh4, sparc64, x32]

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.15) [m68k, sparc64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.34) [niet alpha, ia64, m68k, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.18.0) [hppa, ia64, sh4, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.18.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: liblzma5 (>= 5.1.1alpha+20120614) [niet hppa, m68k, sh4, sparc64, x32]

  XZ-format compression library

• dep: r-api-3.4 [m68k]

  Pakket niet beschikbaar

• dep: r-api-3.5 [sparc64]

  Pakket niet beschikbaar

• dep: r-api-4.0 [niet m68k, sparc64]

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.19 [niet hppa, ia64, m68k, sh4, sparc64, x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Pakket niet beschikbaar

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-2) [x32]

• dep: r-bioc-annotationdbi (>= 1.27.9) [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R Annotation Database Interface for BioConductor

  dep: r-bioc-annotationdbi (>= 1.66.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biobase [hppa, ia64, m68k, sh4, sparc64, x32]

  base functions for Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.37.0) [hppa, ia64, sh4, x32]

  dep: r-bioc-biocgenerics (>= 0.50.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biostrings (>= 2.33.5) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [sparc64]

  dep: r-bioc-biostrings (>= 2.57.2) [hppa, ia64, sh4, x32]

  dep: r-bioc-biostrings (>= 2.72.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-bsgenome (>= 1.37.6) [m68k]

  BioConductor infrastructure for Biostrings-based genome data packages

  dep: r-bioc-bsgenome (>= 1.47.3) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-bsgenome (>= 1.72.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomeinfodb (>= 1.11.4) [m68k]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.15.2) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomeinfodb (>= 1.40.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomicfeatures (>= 1.27.4) [m68k]

  GNU R tools for making and manipulating transcript centric annotations

  dep: r-bioc-genomicfeatures (>= 1.31.3) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomicfeatures (>= 1.56.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomicranges (>= 1.27.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [sparc64]

  dep: r-bioc-genomicranges (>= 1.41.5) [hppa, ia64, sh4, x32]

  dep: r-bioc-genomicranges (>= 1.56.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-iranges (>= 2.13.13) [sparc64]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.23.9) [hppa, ia64, sh4, x32]

  dep: r-bioc-iranges (>= 2.3.25) [m68k]

  dep: r-bioc-iranges (>= 2.38.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-matrixgenerics [hppa, ia64, sh4, x32]

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

  dep: r-bioc-matrixgenerics (>= 1.16.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rhtslib (>= 1.99.3) [hppa, ia64, sh4, x32]

  HTSlib high-throughput sequencing library as GNU R package

  dep: r-bioc-rhtslib (>= 3.0.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rsamtools (>= 1.23.10) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.33.6) [sparc64]

  dep: r-bioc-rsamtools (>= 1.99.0) [hppa, ia64, sh4, x32]

  dep: r-bioc-rsamtools (>= 2.20.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rtracklayer (>= 1.25.16) [m68k]

  GNU R interface to genome browsers and their annotation tracks

  dep: r-bioc-rtracklayer (>= 1.39.7) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-rtracklayer (>= 1.64.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.24) [sparc64]

  dep: r-bioc-s4vectors (>= 0.27.12) [hppa, ia64, sh4, x32]

  dep: r-bioc-s4vectors (>= 0.42.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-summarizedexperiment (>= 1.19.5) [hppa, ia64, sh4, x32]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.34.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]

  dep: r-bioc-summarizedexperiment (>= 1.9.9) [sparc64]

• dep: r-bioc-xvector (>= 0.19.7) [sparc64]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.29.2) [hppa, ia64, sh4, x32]

  dep: r-bioc-xvector (>= 0.44.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  dep: r-bioc-xvector (>= 0.5.6) [m68k]

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, sparc64, x32]

  (Virtual) zlibbioc Bioconductor package

  dep: r-bioc-zlibbioc (>= 1.50.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• dep: zlib1g (>= 1:1.2.3.3) [niet hppa, sh4, x32]

  compressiebibliotheek - programma's

• rec: r-bioc-snpstats

  BioConductor SnpMatrix and XSnpMatrix classes and methods

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-annotationhub [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R client to access AnnotationHub resources

  sug: r-bioc-annotationhub (>= 3.12.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-snpstats [hppa, ia64, m68k, sh4, x32]

  BioConductor SnpMatrix and XSnpMatrix classes and methods

  sug: r-bioc-snpstats (>= 1.54.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-cran-ggplot2

  implementation of the Grammar of Graphics

• sug: r-cran-httr [niet hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R tools for working with URLs and HTTP

• sug: r-cran-jsonlite [niet hppa, ia64, m68k, sh4, sparc64, x32]

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr [niet m68k, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-magick [niet hppa, ia64, m68k, sh4, sparc64, x32]

  advanced graphics and image-processing in GNU R

• sug: r-cran-runit [niet sparc64]

  GNU R package providing unit testing framework

r-bioc-variantannotation downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.50.0-1	3.432,7 kB	6.905,0 kB	[overzicht]
amd64	1.50.0-1	3.425,5 kB	6.760,0 kB	[overzicht]
arm64	1.50.0-1	3.408,1 kB	6.776,0 kB	[overzicht]
hppa (unofficial port)	1.48.1-1	3.434,8 kB	6.221,0 kB	[overzicht]
ia64 (unofficial port)	1.48.1-1+b1	3.527,1 kB	6.992,0 kB	[overzicht]
m68k (unofficial port)	1.24.2-1	2.311,9 kB	2.941,0 kB	[overzicht]
mips64el	1.50.0-1	3.398,1 kB	6.878,0 kB	[overzicht]
ppc64 (unofficial port)	1.50.0-1	3.459,6 kB	7.166,0 kB	[overzicht]
ppc64el	1.50.0-1	3.459,2 kB	7.032,0 kB	[overzicht]
riscv64	1.50.0-1	3.437,7 kB	6.612,0 kB	[overzicht]
s390x	1.50.0-1	3.440,0 kB	6.860,0 kB	[overzicht]
sh4 (unofficial port)	1.48.1-1	3.463,5 kB	5.991,0 kB	[overzicht]
sparc64 (unofficial port)	1.28.10-1	2.919,0 kB	4.040,0 kB	[overzicht]
x32 (unofficial port)	1.44.1-1	3.556,8 kB	5.071,0 kB	[overzicht]