Pakket: r-bioc-rtracklayer (1.64.0-1 en anderen)

[ Bron: r-bioc-rtracklayer  ]

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Andere aan r-bioc-rtracklayer gerelateerde pakketten

• dep: libc6 (>= 2.15) [m68k]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.28) [sparc64]

  dep: libc6 (>= 2.34) [hppa, x32]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.38) [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcurl4t64 (>= 7.16.2) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libssl1.1 (>= 1.1.0) [m68k]

  Pakket niet beschikbaar

• dep: libssl3t64 (>= 3.0.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  Secure Sockets Layer toolkit - shared libraries

• dep: r-api-3.4 [m68k]

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• dep: r-api-3.5 [sparc64]

  Pakket niet beschikbaar

• dep: r-api-4.0 [niet m68k, sparc64]

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.19 [niet hppa, ia64, m68k, sh4, sparc64, x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Pakket niet beschikbaar

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biocgenerics (>= 0.13.8) [m68k]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.25.1) [sparc64]

  dep: r-bioc-biocgenerics (>= 0.35.3) [hppa, ia64, sh4, x32]

  dep: r-bioc-biocgenerics (>= 0.50.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biocio [hppa, ia64, sh4, x32]

  standard input and output for Bioconductor packages

  dep: r-bioc-biocio (>= 1.14.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biostrings (>= 2.43.7) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-biostrings (>= 2.72.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomeinfodb (>= 1.15.2) [hppa, ia64, sh4, sparc64, x32]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.3.14) [m68k]

  dep: r-bioc-genomeinfodb (>= 1.40.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomicalignments (>= 1.15.6) [hppa, ia64, sh4, sparc64, x32]

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  dep: r-bioc-genomicalignments (>= 1.40.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  dep: r-bioc-genomicalignments (>= 1.5.4) [m68k]

• dep: r-bioc-genomicranges (>= 1.21.20) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [sparc64]

  dep: r-bioc-genomicranges (>= 1.37.2) [hppa, ia64, sh4, x32]

  dep: r-bioc-genomicranges (>= 1.56.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-iranges (>= 2.11.12) [m68k]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.13.13) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-iranges (>= 2.38.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rsamtools (>= 1.17.8) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.31.2) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-rsamtools (>= 2.20.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.19.22) [sparc64]

  dep: r-bioc-s4vectors (>= 0.23.18) [hppa, ia64, sh4, x32]

  dep: r-bioc-s4vectors (>= 0.42.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-xvector (>= 0.19.7) [hppa, ia64, sh4, sparc64, x32]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.44.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  dep: r-bioc-xvector (>= 0.9.4) [m68k]

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, sparc64, x32]

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  dep: r-bioc-zlibbioc (>= 1.50.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-cran-curl [niet hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R modern and flexible web client for R

• dep: r-cran-httr [niet hppa, ia64, m68k, sh4, sparc64, x32]

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• dep: r-cran-rcurl (>= 1.4-2) [hppa, ia64, m68k, sh4, sparc64, x32]

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• dep: r-cran-restfulr (>= 0.0.13) [niet m68k, sparc64]

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• dep: r-cran-xml (>= 1.98-0)

  GNU R package for XML parsing and generation

• dep: zlib1g (>= 1:1.1.4)

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• sug: r-bioc-bsgenome (>= 1.33.4) [hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor infrastructure for Biostrings-based genome data packages

  sug: r-bioc-bsgenome (>= 1.72.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-genefilter [hppa, ia64, m68k, sh4, sparc64, x32]

  methods for filtering genes from microarray experiments

  sug: r-bioc-genefilter (>= 1.86.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]

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  sug: r-bioc-genomicfeatures (>= 1.56.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-limma [hppa, ia64, m68k, sh4, sparc64, x32]

  linear models for microarray data

  sug: r-bioc-limma (>= 3.60.3) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-org.hs.eg.db [hppa, ia64, sh4, x32]

  genome-wide annotation for Human

  sug: r-bioc-org.hs.eg.db (>= 3.19.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-cran-runit

  GNU R package providing unit testing framework

r-bioc-rtracklayer downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.64.0-1	4.940,1 kB	6.661,0 kB	[overzicht]
amd64	1.64.0-1	4.942,3 kB	6.557,0 kB	[overzicht]
arm64	1.64.0-1	4.932,5 kB	6.597,0 kB	[overzicht]
hppa (unofficial port)	1.62.0-1	4.970,1 kB	6.722,0 kB	[overzicht]
ia64 (unofficial port)	1.62.0-1	5.004,6 kB	7.092,0 kB	[overzicht]
m68k (unofficial port)	1.38.0-1	1.824,3 kB	2.765,0 kB	[overzicht]
mips64el	1.64.0-1	4.929,2 kB	6.627,0 kB	[overzicht]
ppc64 (unofficial port)	1.64.0-1	4.954,8 kB	6.799,0 kB	[overzicht]
ppc64el	1.64.0-1	4.954,7 kB	6.725,0 kB	[overzicht]
riscv64	1.64.0-1	4.940,6 kB	6.509,0 kB	[overzicht]
s390x	1.64.0-1	4.941,1 kB	6.589,0 kB	[overzicht]
sh4 (unofficial port)	1.62.0-1	4.982,8 kB	6.647,0 kB	[overzicht]
sparc64 (unofficial port)	1.42.1-2	2.356,6 kB	3.783,0 kB	[overzicht]
x32 (unofficial port)	1.58.0-1	4.983,9 kB	6.659,0 kB	[overzicht]