Package: r-bioc-variantannotation (1.50.0-1 and others)

[ Source: r-bioc-variantannotation  ]

annotazione di varianti genetiche per BioConductor

Questo pacchetto per BioConductor fornisce funzioni R per annotare varianti, calcolare cambiamenti nella codifica degli aminoacidi e prevedere i risultati delle codifiche.

Other Packages Related to r-bioc-variantannotation

• dep: libbz2-1.0 [not hppa, m68k, sh4, sparc64, x32]

  libreria compressione file a ordinamento blocchi di alta qualità - runtime

• dep: libc6 (>= 2.15) [m68k, sparc64]

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.34) [not alpha, ia64, m68k, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.18.0) [hppa, ia64, sh4, x32]

  libreria lato client facile da usare per il trasferimento di URL (versione OpenSSL)

• dep: libcurl4t64 (>= 7.18.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

  libreria lato client facile da usare per il trasferimento di URL (versione OpenSSL)

• dep: liblzma5 (>= 5.1.1alpha+20120614) [not hppa, m68k, sh4, sparc64, x32]

  libreria per compressione in formato XZ

• dep: r-api-3.4 [m68k]

  Package not available

• dep: r-api-3.5 [sparc64]

  Package not available

• dep: r-api-4.0 [not m68k, sparc64]

  virtual package provided by r-base-core

• dep: r-api-bioc-3.16 [x32]

  Package not available

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Package not available

• dep: r-api-bioc-3.19 [not hppa, ia64, m68k, sh4, sparc64, x32]

  virtual package provided by r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Package not available

• dep: r-base-core (>= 3.4.3-1) [m68k]

  nocciolo del sistema per calcoli e grafici statistici GNU R

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-2) [x32]

• dep: r-bioc-annotationdbi (>= 1.27.9) [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R Annotation Database Interface per BioConductor

  dep: r-bioc-annotationdbi (>= 1.66.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biobase [hppa, ia64, m68k, sh4, sparc64, x32]

  funzioni base per Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]

  funzioni generiche per Bioconductor

  dep: r-bioc-biocgenerics (>= 0.37.0) [hppa, ia64, sh4, x32]

  dep: r-bioc-biocgenerics (>= 0.50.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biostrings (>= 2.33.5) [m68k]

  oggetti stringa di GNU R che rappresentano sequenze biologiche

  dep: r-bioc-biostrings (>= 2.47.6) [sparc64]

  dep: r-bioc-biostrings (>= 2.57.2) [hppa, ia64, sh4, x32]

  dep: r-bioc-biostrings (>= 2.72.1) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-bsgenome (>= 1.37.6) [m68k]

  infrastruttura BioConductor per pacchetti di dati genomici basati su Biostrings

  dep: r-bioc-bsgenome (>= 1.47.3) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-bsgenome (>= 1.72.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomeinfodb (>= 1.11.4) [m68k]

  utilità BioConductor per manipolare identificatori di cromosomi

  dep: r-bioc-genomeinfodb (>= 1.15.2) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomeinfodb (>= 1.40.1) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomicfeatures (>= 1.27.4) [m68k]

  strumenti per GNU R per fare annotazioni centrate su trascritti e manipolarle

  dep: r-bioc-genomicfeatures (>= 1.31.3) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomicfeatures (>= 1.56.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomicranges (>= 1.27.6) [m68k]

  rappresentazione e manipolazione di intervalli genomici di BioConductor

  dep: r-bioc-genomicranges (>= 1.31.8) [sparc64]

  dep: r-bioc-genomicranges (>= 1.41.5) [hppa, ia64, sh4, x32]

  dep: r-bioc-genomicranges (>= 1.56.1) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-iranges (>= 2.13.13) [sparc64]

  contenitori a basso livello per memorizzare insiemi di intervalli di interi per GNU R

  dep: r-bioc-iranges (>= 2.23.9) [hppa, ia64, sh4, x32]

  dep: r-bioc-iranges (>= 2.3.25) [m68k]

  dep: r-bioc-iranges (>= 2.38.1) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-matrixgenerics [hppa, ia64, sh4, x32]

  funzioni S4 per statistiche riassuntive generiche che operano su oggetti stile matrice

  dep: r-bioc-matrixgenerics (>= 1.16.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rhtslib (>= 1.99.3) [hppa, ia64, sh4, x32]

  HTSlib high-throughput sequencing library as GNU R package

  dep: r-bioc-rhtslib (>= 3.0.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rsamtools (>= 1.23.10) [m68k]

  allineamento binario (BAM), variant call (BCF) o importazione di file tabix per GNU R

  dep: r-bioc-rsamtools (>= 1.33.6) [sparc64]

  dep: r-bioc-rsamtools (>= 1.99.0) [hppa, ia64, sh4, x32]

  dep: r-bioc-rsamtools (>= 2.20.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rtracklayer (>= 1.25.16) [m68k]

  interfaccia GNU R per navigatori di genomi e loro tracce di annotazione

  dep: r-bioc-rtracklayer (>= 1.39.7) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-rtracklayer (>= 1.64.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

  implementazione di vettori e liste per BioConductor S4

  dep: r-bioc-s4vectors (>= 0.17.24) [sparc64]

  dep: r-bioc-s4vectors (>= 0.27.12) [hppa, ia64, sh4, x32]

  dep: r-bioc-s4vectors (>= 0.42.1) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-summarizedexperiment (>= 1.19.5) [hppa, ia64, sh4, x32]

  contenitore per saggi BioConductor

  dep: r-bioc-summarizedexperiment (>= 1.34.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

  dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]

  dep: r-bioc-summarizedexperiment (>= 1.9.9) [sparc64]

• dep: r-bioc-xvector (>= 0.19.7) [sparc64]

  rappresentazione e manipolazione di sequenze esterne per BioConductor

  dep: r-bioc-xvector (>= 0.29.2) [hppa, ia64, sh4, x32]

  dep: r-bioc-xvector (>= 0.44.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

  dep: r-bioc-xvector (>= 0.5.6) [m68k]

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, sparc64, x32]

  (Virtual) zlibbioc Bioconductor package

  dep: r-bioc-zlibbioc (>= 1.50.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-cran-dbi

  pacchetto GNU R che fornisce un'interfaccia generica per database

• dep: zlib1g (>= 1:1.2.3.3) [not hppa, sh4, x32]

  libreria di compressione - runtime

• rec: r-bioc-snpstats

  classi e metodi SnpMatrix e XSnpMatrix per BioConductor

• rec: r-cran-runit

  pacchetto GNU R che fornisce un'infrastruttura per test di unità

• sug: r-bioc-annotationhub [hppa, ia64, m68k, sh4, sparc64, x32]

  client GNU R per accedere a risorse AnnotationHug

  sug: r-bioc-annotationhub (>= 3.12.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [not hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-snpstats [hppa, ia64, m68k, sh4, x32]

  classi e metodi SnpMatrix e XSnpMatrix per BioConductor

  sug: r-bioc-snpstats (>= 1.54.0) [not hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-cran-ggplot2

  implementazione di Grammar of Graphics

• sug: r-cran-httr [not hppa, ia64, m68k, sh4, sparc64, x32]

  strumenti GNU R per lavorare con URL e HTTP

• sug: r-cran-jsonlite [not hppa, ia64, m68k, sh4, sparc64, x32]

  parsificatore e generatore di JSON robusto e ad alte prestazioni per R

• sug: r-cran-knitr [not m68k, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-magick [not hppa, ia64, m68k, sh4, sparc64, x32]

  advanced graphics and image-processing in GNU R

• sug: r-cran-runit [not sparc64]

  pacchetto GNU R che fornisce un'infrastruttura per test di unità

Download r-bioc-variantannotation

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.50.0-1	3,432.7 kB	6,905.0 kB	[list of files]
amd64	1.50.0-1	3,425.5 kB	6,760.0 kB	[list of files]
arm64	1.50.0-1	3,408.1 kB	6,776.0 kB	[list of files]
hppa (unofficial port)	1.48.1-1	3,434.8 kB	6,221.0 kB	[list of files]
ia64 (unofficial port)	1.48.1-1+b1	3,527.1 kB	6,992.0 kB	[list of files]
m68k (unofficial port)	1.24.2-1	2,311.9 kB	2,941.0 kB	[list of files]
mips64el	1.50.0-1	3,398.1 kB	6,878.0 kB	[list of files]
ppc64 (unofficial port)	1.50.0-1	3,459.6 kB	7,166.0 kB	[list of files]
ppc64el	1.50.0-1	3,459.2 kB	7,032.0 kB	[list of files]
riscv64	1.50.0-1	3,437.7 kB	6,612.0 kB	[list of files]
s390x	1.50.0-1	3,440.0 kB	6,860.0 kB	[list of files]
sh4 (unofficial port)	1.48.1-1	3,463.5 kB	5,991.0 kB	[list of files]
sparc64 (unofficial port)	1.28.10-1	2,919.0 kB	4,040.0 kB	[list of files]
x32 (unofficial port)	1.44.1-1	3,556.8 kB	5,071.0 kB	[list of files]