Paketti: r-bioc-variantannotation (1.52.0-2 ja muut)

[ Source: r-bioc-variantannotation  ]

BioConductor annotation of genetic variants

This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes.

Muut pakettiin r-bioc-variantannotation liittyvät paketit

• dep: libbz2-1.0 [ei hppa, m68k, sh4, sparc64, x32]

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.15) [m68k, sparc64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.34) [ei alpha, ia64, m68k, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.18.0) [hppa, ia64, sh4, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.18.0) [ei hppa, ia64, m68k, sh4, sparc64, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: liblzma5 (>= 5.1.1alpha+20120614) [ei hppa, m68k, sh4, sparc64, x32]

  XZ-tiedostomuodon pakkauskirjasto

• dep: r-api-3.4 [m68k]

  Paketti ei saatavilla

• dep: r-api-3.5 [sparc64]

  Paketti ei saatavilla

• dep: r-api-4.0 [ei m68k, sparc64]

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketti ei saatavilla

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Paketti ei saatavilla

• dep: r-api-bioc-3.20 [ei hppa, ia64, m68k, sh4, sparc64, x32]

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Paketti ei saatavilla

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-2) [x32]

• dep: r-bioc-annotationdbi (>= 1.27.9)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.37.0) [ei m68k, sparc64]

• dep: r-bioc-biostrings (>= 2.33.5) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [sparc64]

  dep: r-bioc-biostrings (>= 2.57.2) [ei m68k, sparc64]

• dep: r-bioc-bsgenome (>= 1.37.6) [m68k]

  BioConductor infrastructure for Biostrings-based genome data packages

  dep: r-bioc-bsgenome (>= 1.47.3) [ei m68k]

• dep: r-bioc-genomeinfodb (>= 1.11.4) [m68k]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.15.2) [ei m68k]

• dep: r-bioc-genomicfeatures (>= 1.27.4) [m68k]

  GNU R tools for making and manipulating transcript centric annotations

  dep: r-bioc-genomicfeatures (>= 1.31.3) [ei m68k]

• dep: r-bioc-genomicranges (>= 1.27.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [sparc64]

  dep: r-bioc-genomicranges (>= 1.41.5) [ei m68k, sparc64]

• dep: r-bioc-iranges (>= 2.13.13) [sparc64]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.23.9) [ei m68k, sparc64]

  dep: r-bioc-iranges (>= 2.3.25) [m68k]

• dep: r-bioc-matrixgenerics [ei m68k, sparc64]

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

• dep: r-bioc-rhtslib (>= 1.99.3) [hppa, ia64, sh4, x32]

  HTSlib high-throughput sequencing library as GNU R package

  dep: r-bioc-rhtslib (>= 2.99.0) [ei hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rsamtools (>= 1.23.10) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.33.6) [sparc64]

  dep: r-bioc-rsamtools (>= 1.99.0) [hppa, ia64, sh4, x32]

  dep: r-bioc-rsamtools (>= 2.19.1) [ei hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rtracklayer (>= 1.25.16) [m68k]

  GNU R interface to genome browsers and their annotation tracks

  dep: r-bioc-rtracklayer (>= 1.39.7) [ei m68k]

• dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.24) [sparc64]

  dep: r-bioc-s4vectors (>= 0.27.12) [ei m68k, sparc64]

• dep: r-bioc-summarizedexperiment (>= 1.19.5) [ei m68k, sparc64]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]

  dep: r-bioc-summarizedexperiment (>= 1.9.9) [sparc64]

• dep: r-bioc-xvector (>= 0.19.7) [sparc64]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.29.2) [ei m68k, sparc64]

  dep: r-bioc-xvector (>= 0.5.6) [m68k]

• dep: r-bioc-zlibbioc [ei m68k]

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• dep: zlib1g (>= 1:1.2.3.3) [ei hppa, sh4, x32]

  pakkauskirjaston ajonaikaistiedostot

• rec: r-bioc-snpstats

  BioConductor SnpMatrix and XSnpMatrix classes and methods

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-annotationhub

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biocstyle [ei m68k, sparc64]

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-snpstats [ei sparc64]

  BioConductor SnpMatrix and XSnpMatrix classes and methods

• sug: r-cran-ggplot2

  implementation of the Grammar of Graphics

• sug: r-cran-httr [ei hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R tools for working with URLs and HTTP

• sug: r-cran-jsonlite [ei hppa, ia64, m68k, sh4, sparc64, x32]

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr [ei m68k, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-magick [ei hppa, ia64, m68k, sh4, sparc64, x32]

  advanced graphics and image-processing in GNU R

• sug: r-cran-runit [ei sparc64]

  GNU R package providing unit testing framework

Imuroi r-bioc-variantannotation

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.52.0-2	3,471.7 kt	6,950.0 kt	[tiedostoluettelo]
amd64	1.52.0-2	3,465.5 kt	6,805.0 kt	[tiedostoluettelo]
arm64	1.52.0-2	3,448.2 kt	6,821.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	1.48.1-1	3,434.8 kt	6,221.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	1.48.1-1+b1	3,527.1 kt	6,992.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	1.24.2-1	2,311.9 kt	2,941.0 kt	[tiedostoluettelo]
mips64el	1.52.0-2	3,437.9 kt	6,923.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.52.0-2	3,499.1 kt	7,212.0 kt	[tiedostoluettelo]
ppc64el	1.52.0-2	3,498.9 kt	7,077.0 kt	[tiedostoluettelo]
riscv64	1.52.0-2	3,477.2 kt	6,657.0 kt	[tiedostoluettelo]
s390x	1.52.0-2	3,479.5 kt	6,905.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.48.1-1	3,463.5 kt	5,991.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.28.10-1	2,919.0 kt	4,040.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.44.1-1	3,556.8 kt	5,071.0 kt	[tiedostoluettelo]