パッケージ: r-bioc-variantannotation (1.50.0-1 など)

[ ソース: r-bioc-variantannotation  ]

BioConductor annotation of genetic variants

This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes.

その他の r-bioc-variantannotation 関連パッケージ

• dep: libbz2-1.0 [hppa, m68k, sh4, sparc64, x32 以外]

  高品質なブロックソートファイル圧縮器 - ランタイム

• dep: libc6 (>= 2.15) [m68k, sparc64]

  GNU C ライブラリ: 共有ライブラリ
  以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb

  dep: libc6 (>= 2.34) [alpha, ia64, m68k, sh4, sparc64 以外]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C ライブラリ: 共有ライブラリ
  以下のパッケージによって提供される仮想パッケージでもあります: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.18.0) [hppa, ia64, sh4, x32]

  使いやすいクライアントサイドの URL 転送ライブラリ (OpenSSL フレーバ)

• dep: libcurl4t64 (>= 7.18.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

  使いやすいクライアントサイドの URL 転送ライブラリ (OpenSSL フレーバ)

• dep: liblzma5 (>= 5.1.1alpha+20120614) [hppa, m68k, sh4, sparc64, x32 以外]

  XZ 形式の圧縮ライブラリ

• dep: r-api-3.4 [m68k]

  パッケージは利用できません

• dep: r-api-3.5 [sparc64]

  パッケージは利用できません

• dep: r-api-4.0 [m68k, sparc64 以外]

  以下のパッケージによって提供される仮想パッケージです: r-base-core

• dep: r-api-bioc-3.16 [x32]

  パッケージは利用できません

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  パッケージは利用できません

• dep: r-api-bioc-3.19 [hppa, ia64, m68k, sh4, sparc64, x32 以外]

  以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  パッケージは利用できません

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-2) [x32]

• dep: r-bioc-annotationdbi (>= 1.27.9) [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R Annotation Database Interface for BioConductor

  dep: r-bioc-annotationdbi (>= 1.66.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-biobase [hppa, ia64, m68k, sh4, sparc64, x32]

  base functions for Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.37.0) [hppa, ia64, sh4, x32]

  dep: r-bioc-biocgenerics (>= 0.50.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-biostrings (>= 2.33.5) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [sparc64]

  dep: r-bioc-biostrings (>= 2.57.2) [hppa, ia64, sh4, x32]

  dep: r-bioc-biostrings (>= 2.72.1) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-bsgenome (>= 1.37.6) [m68k]

  BioConductor infrastructure for Biostrings-based genome data packages

  dep: r-bioc-bsgenome (>= 1.47.3) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-bsgenome (>= 1.72.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-genomeinfodb (>= 1.11.4) [m68k]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.15.2) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomeinfodb (>= 1.40.1) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-genomicfeatures (>= 1.27.4) [m68k]

  GNU R tools for making and manipulating transcript centric annotations

  dep: r-bioc-genomicfeatures (>= 1.31.3) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomicfeatures (>= 1.56.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-genomicranges (>= 1.27.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [sparc64]

  dep: r-bioc-genomicranges (>= 1.41.5) [hppa, ia64, sh4, x32]

  dep: r-bioc-genomicranges (>= 1.56.1) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-iranges (>= 2.13.13) [sparc64]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.23.9) [hppa, ia64, sh4, x32]

  dep: r-bioc-iranges (>= 2.3.25) [m68k]

  dep: r-bioc-iranges (>= 2.38.1) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-matrixgenerics [hppa, ia64, sh4, x32]

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

  dep: r-bioc-matrixgenerics (>= 1.16.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-rhtslib (>= 1.99.3) [hppa, ia64, sh4, x32]

  HTSlib high-throughput sequencing library as GNU R package

  dep: r-bioc-rhtslib (>= 3.0.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-rsamtools (>= 1.23.10) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.33.6) [sparc64]

  dep: r-bioc-rsamtools (>= 1.99.0) [hppa, ia64, sh4, x32]

  dep: r-bioc-rsamtools (>= 2.20.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-rtracklayer (>= 1.25.16) [m68k]

  GNU R interface to genome browsers and their annotation tracks

  dep: r-bioc-rtracklayer (>= 1.39.7) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-rtracklayer (>= 1.64.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.24) [sparc64]

  dep: r-bioc-s4vectors (>= 0.27.12) [hppa, ia64, sh4, x32]

  dep: r-bioc-s4vectors (>= 0.42.1) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-bioc-summarizedexperiment (>= 1.19.5) [hppa, ia64, sh4, x32]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.34.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

  dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]

  dep: r-bioc-summarizedexperiment (>= 1.9.9) [sparc64]

• dep: r-bioc-xvector (>= 0.19.7) [sparc64]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.29.2) [hppa, ia64, sh4, x32]

  dep: r-bioc-xvector (>= 0.44.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

  dep: r-bioc-xvector (>= 0.5.6) [m68k]

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, sparc64, x32]

  (Virtual) zlibbioc Bioconductor package

  dep: r-bioc-zlibbioc (>= 1.50.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• dep: zlib1g (>= 1:1.2.3.3) [hppa, sh4, x32 以外]

  圧縮ライブラリ - ランタイム

• rec: r-bioc-snpstats

  BioConductor SnpMatrix and XSnpMatrix classes and methods

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-annotationhub [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R client to access AnnotationHub resources

  sug: r-bioc-annotationhub (>= 3.12.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• sug: r-bioc-snpstats [hppa, ia64, m68k, sh4, x32]

  BioConductor SnpMatrix and XSnpMatrix classes and methods

  sug: r-bioc-snpstats (>= 1.54.0) [hppa, ia64, m68k, sh4, sparc64, x32 以外]

• sug: r-cran-ggplot2

  implementation of the Grammar of Graphics

• sug: r-cran-httr [hppa, ia64, m68k, sh4, sparc64, x32 以外]

  GNU R tools for working with URLs and HTTP

• sug: r-cran-jsonlite [hppa, ia64, m68k, sh4, sparc64, x32 以外]

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr [m68k, sparc64, x32 以外]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-magick [hppa, ia64, m68k, sh4, sparc64, x32 以外]

  advanced graphics and image-processing in GNU R

• sug: r-cran-runit [sparc64 以外]

  GNU R package providing unit testing framework

r-bioc-variantannotation のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード

アーキテクチャ	バージョン	パッケージサイズ	インストールサイズ	ファイル
alpha (非公式の移植版)	1.50.0-1	3,432.7 kB	6,905.0 kB	[ファイル一覧]
amd64	1.50.0-1	3,425.5 kB	6,760.0 kB	[ファイル一覧]
arm64	1.50.0-1	3,408.1 kB	6,776.0 kB	[ファイル一覧]
hppa (非公式の移植版)	1.48.1-1	3,434.8 kB	6,221.0 kB	[ファイル一覧]
ia64 (非公式の移植版)	1.48.1-1+b1	3,527.1 kB	6,992.0 kB	[ファイル一覧]
m68k (非公式の移植版)	1.24.2-1	2,311.9 kB	2,941.0 kB	[ファイル一覧]
mips64el	1.50.0-1	3,398.1 kB	6,878.0 kB	[ファイル一覧]
ppc64 (非公式の移植版)	1.50.0-1	3,459.6 kB	7,166.0 kB	[ファイル一覧]
ppc64el	1.50.0-1	3,459.2 kB	7,032.0 kB	[ファイル一覧]
riscv64	1.50.0-1	3,437.7 kB	6,612.0 kB	[ファイル一覧]
s390x	1.50.0-1	3,440.0 kB	6,860.0 kB	[ファイル一覧]
sh4 (非公式の移植版)	1.48.1-1	3,463.5 kB	5,991.0 kB	[ファイル一覧]
sparc64 (非公式の移植版)	1.28.10-1	2,919.0 kB	4,040.0 kB	[ファイル一覧]
x32 (非公式の移植版)	1.44.1-1	3,556.8 kB	5,071.0 kB	[ファイル一覧]