Paketti: r-bioc-rsamtools (2.18.0+dfsg-1 ja muut)

[ Source: r-bioc-rsamtools  ]

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Muut pakettiin r-bioc-rsamtools liittyvät paketit

• dep: libbz2-1.0 [ei hppa, m68k, sh4, sparc64, x32]

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.15) [m68k, sparc64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.34) [ei alpha, ia64, m68k, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.18.0) [alpha, hppa, ia64, sh4, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.18.0) [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC:n apukirjasto

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Paketti ei saatavilla

• dep: libgcc2 (>= 4.2.1) [m68k]

  Paketti ei saatavilla

• dep: libgomp1 (>= 4.2.1) [m68k, sparc64]

  GCC OpenMP (GOMP) support library

• dep: liblzma5 (>= 5.1.1alpha+20120614) [ei hppa, m68k, sh4, sparc64, x32]

  XZ-tiedostomuodon pakkauskirjasto

• dep: libstdc++6 (>= 11) [ei m68k, sparc64]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 5.2) [m68k, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-3.4 [m68k]

  Paketti ei saatavilla

• dep: r-api-3.5 [sparc64]

  Paketti ei saatavilla

• dep: r-api-4.0 [ei m68k, sparc64]

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketti ei saatavilla

• dep: r-api-bioc-3.18 [ei m68k, sparc64, x32]

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Paketti ei saatavilla

• dep: r-base-core (>= 3.4.2-2) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biocgenerics (>= 0.1.3) [m68k]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.25.1) [ei m68k]

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.37.1) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [ei m68k]

• dep: r-bioc-genomeinfodb (>= 1.1.3)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.21.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [ei m68k]

• dep: r-bioc-iranges (>= 2.13.12) [ei m68k]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.3.7) [m68k]

• dep: r-bioc-rhtslib (>= 1.99.3) [ei m68k, sparc64]

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-s4vectors (>= 0.13.8) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.25) [ei m68k]

• dep: r-bioc-xvector (>= 0.15.1) [m68k]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.19.7) [ei m68k]

• dep: r-bioc-zlibbioc [ei m68k]

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-bitops

  GNU R package implementing bitwise operations

• dep: zlib1g (>= 1:1.2.3.3) [ei hppa, sh4, x32]

  pakkauskirjaston ajonaikaistiedostot

• rec: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle [ei m68k, sparc64]

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-shortread (>= 1.19.10) [ei sparc64]

  GNU R classes and methods for high-throughput short-read sequencing data

• sug: r-cran-knitr [ei m68k, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit [ei sparc64]

  GNU R package providing unit testing framework

Imuroi r-bioc-rsamtools

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	2.18.0+dfsg-1+b1	3,499.6 kt	5,779.0 kt	[tiedostoluettelo]
amd64	2.18.0+dfsg-1+b1	3,500.1 kt	5,581.0 kt	[tiedostoluettelo]
arm64	2.18.0+dfsg-1+b1	3,456.7 kt	5,585.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	2.18.0+dfsg-1	3,506.9 kt	5,731.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	2.18.0+dfsg-1+b1	3,636.0 kt	6,843.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	1.30.0-1	3,206.0 kt	5,170.0 kt	[tiedostoluettelo]
mips64el	2.18.0+dfsg-1+b1	3,452.0 kt	5,771.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	2.18.0+dfsg-1+b1	3,537.8 kt	6,173.0 kt	[tiedostoluettelo]
ppc64el	2.18.0+dfsg-1+b1	3,545.3 kt	5,969.0 kt	[tiedostoluettelo]
riscv64	2.18.0+dfsg-1+b2	3,518.6 kt	5,393.0 kt	[tiedostoluettelo]
s390x	2.18.0+dfsg-1+b1	3,509.8 kt	5,713.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	2.18.0+dfsg-1	3,552.9 kt	5,453.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.34.1-1	3,424.1 kt	5,736.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	2.14.0-1	3,666.4 kt	5,700.0 kt	[tiedostoluettelo]