[ Source: r-bioc-genomicranges ]
Package: r-bioc-genomicranges (1.56.2+dfsg-1 and others)
Links for r-bioc-genomicranges
Debian Resources:
Download Source Package r-bioc-genomicranges:
- [r-bioc-genomicranges_1.56.2+dfsg-1.dsc]
- [r-bioc-genomicranges_1.56.2+dfsg.orig.tar.xz]
- [r-bioc-genomicranges_1.56.2+dfsg-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
BioConductor representation and manipulation of genomic intervals
The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.
Other Packages Related to r-bioc-genomicranges
|
|
|
|
-
- dep: libc6 (>= 2.16) [x32]
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]
-
- dep: r-api-4.0
- virtual package provided by r-base-core
-
- dep: r-api-bioc-3.18 [hppa, ia64, m68k, sh4, x32]
- Package not available
-
- dep: r-api-bioc-3.19 [not hppa, ia64, m68k, sh4, x32]
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-bioc-biocgenerics (>= 0.37.0)
- generic functions for Bioconductor
-
- dep: r-bioc-genomeinfodb (>= 1.15.2)
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-iranges (>= 2.31.2) [hppa, ia64, m68k, sh4, x32]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.37.1) [not hppa, ia64, m68k, sh4, x32]
-
- dep: r-bioc-s4vectors (>= 0.27.12)
- BioConductor S4 implementation of vectors and lists
-
- dep: r-bioc-xvector (>= 0.29.2)
- BioConductor representation and manpulation of external sequences
-
- sug: r-bioc-annotate
- BioConductor annotation for microarrays
-
- sug: r-bioc-annotationdbi
- GNU R Annotation Database Interface for BioConductor
-
- sug: r-bioc-annotationhub
- GNU R client to access AnnotationHub resources
-
- sug: r-bioc-biobase
- base functions for Bioconductor
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-biostrings (>= 2.25.3)
- GNU R string objects representing biological sequences
-
- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
-
- sug: r-bioc-deseq2 [not m68k]
- R package for RNA-Seq Differential Expression Analysis
-
- sug: r-bioc-dexseq
- GNU R inference of differential exon usage in RNA-Seq
-
- sug: r-bioc-edger
- Empirical analysis of digital gene expression data in R
-
- sug: r-bioc-genomicalignments
- BioConductor representation and manipulation of short genomic alignments
-
- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
-
- sug: r-bioc-gviz
- Plotting data and annotation information along genomic coordinates
-
- sug: r-bioc-keggrest
- GNU R client-side REST access to KEGG
-
- sug: r-bioc-rsamtools (>= 1.13.53)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- sug: r-bioc-summarizedexperiment (>= 0.1.5)
- BioConductor assay container
-
- sug: r-bioc-txdbmaker [not hppa, ia64, m68k, sh4, x32]
- Tools for making TxDb objects from genomic annotations
-
- sug: r-bioc-variantannotation
- BioConductor annotation of genetic variants
-
- sug: r-cran-digest
- GNU R package for 'hash digest' of R data structures
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
-
- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
-
- sug: r-cran-runit
- GNU R package providing unit testing framework
Download r-bioc-genomicranges
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
alpha (unofficial port) | 1.56.2+dfsg-1 | 1,799.7 kB | 2,821.0 kB | [list of files] |
amd64 | 1.56.2+dfsg-1 | 1,800.0 kB | 2,806.0 kB | [list of files] |
arm64 | 1.56.2+dfsg-1 | 1,799.7 kB | 2,822.0 kB | [list of files] |
hppa (unofficial port) | 1.54.1+dfsg-1 | 1,783.6 kB | 2,790.0 kB | [list of files] |
ia64 (unofficial port) | 1.54.1+dfsg-1 | 1,783.4 kB | 2,812.0 kB | [list of files] |
m68k (unofficial port) | 1.54.1+dfsg-1 | 1,781.8 kB | 2,780.0 kB | [list of files] |
mips64el | 1.56.2+dfsg-1 | 1,797.5 kB | 2,827.0 kB | [list of files] |
ppc64 (unofficial port) | 1.56.2+dfsg-1 | 1,800.9 kB | 2,886.0 kB | [list of files] |
ppc64el | 1.56.2+dfsg-1 | 1,799.9 kB | 2,822.0 kB | [list of files] |
riscv64 | 1.56.2+dfsg-1 | 1,799.9 kB | 2,798.0 kB | [list of files] |
s390x | 1.56.2+dfsg-1 | 1,799.1 kB | 2,806.0 kB | [list of files] |
sh4 (unofficial port) | 1.54.1+dfsg-1 | 1,781.9 kB | 2,804.0 kB | [list of files] |
sparc64 (unofficial port) | 1.56.2+dfsg-1 | 1,797.5 kB | 3,782.0 kB | [list of files] |
x32 (unofficial port) | 1.54.1+dfsg-1 | 1,784.3 kB | 2,788.0 kB | [list of files] |