Paketti: r-bioc-genomicranges (1.54.1+dfsg-1 ja muut)

[ Source: r-bioc-genomicranges  ]

BioConductor representation and manipulation of genomic intervals

The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

Muut pakettiin r-bioc-genomicranges liittyvät paketit

• dep: libc6 (>= 2.16) [x32]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [ei alpha, arm64, hppa, ia64, ppc64el, riscv64, sh4, x32]

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.18

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.37.0)

  generic functions for Bioconductor

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-iranges (>= 2.31.2)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors (>= 0.27.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.29.2)

  BioConductor representation and manpulation of external sequences

• sug: r-bioc-annotate

  BioConductor annotation for microarrays

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-annotationhub

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biostrings (>= 2.25.3)

  GNU R string objects representing biological sequences

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2 [ei m68k]

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-dexseq

  GNU R inference of differential exon usage in RNA-Seq

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-gviz

  Plotting data and annotation information along genomic coordinates

• sug: r-bioc-keggrest

  GNU R client-side REST access to KEGG

• sug: r-bioc-rsamtools (>= 1.13.53)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-summarizedexperiment (>= 0.1.5)

  BioConductor assay container

• sug: r-bioc-variantannotation

  BioConductor annotation of genetic variants

• sug: r-cran-digest

  GNU R package for 'hash digest' of R data structures

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-runit

  GNU R package providing unit testing framework

Imuroi r-bioc-genomicranges

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.54.1+dfsg-1	1,783.9 kt	2,804.0 kt	[tiedostoluettelo]
amd64	1.54.1+dfsg-1	1,783.9 kt	2,789.0 kt	[tiedostoluettelo]
arm64	1.54.1+dfsg-1	1,783.5 kt	2,805.0 kt	[tiedostoluettelo]
armel	1.54.1+dfsg-1	1,781.4 kt	2,776.0 kt	[tiedostoluettelo]
armhf	1.54.1+dfsg-1	1,781.6 kt	2,768.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	1.54.1+dfsg-1	1,783.6 kt	2,790.0 kt	[tiedostoluettelo]
i386	1.54.1+dfsg-1	1,784.1 kt	2,796.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	1.54.1+dfsg-1	1,783.4 kt	2,812.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	1.54.1+dfsg-1	1,781.8 kt	2,780.0 kt	[tiedostoluettelo]
mips64el	1.54.1+dfsg-1	1,781.3 kt	2,810.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.54.1+dfsg-1	1,785.2 kt	2,869.0 kt	[tiedostoluettelo]
ppc64el	1.54.1+dfsg-1	1,783.8 kt	2,805.0 kt	[tiedostoluettelo]
riscv64	1.54.1+dfsg-1+b1	1,784.0 kt	2,782.0 kt	[tiedostoluettelo]
s390x	1.54.1+dfsg-1	1,783.0 kt	2,789.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.54.1+dfsg-1	1,781.9 kt	2,804.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.54.1+dfsg-1	1,782.0 kt	3,765.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.54.1+dfsg-1	1,784.3 kt	2,788.0 kt	[tiedostoluettelo]