Pakket: macs (3.0.2-1 en anderen)

[ Bron: macs  ]

Model-based Analysis of ChIP-Seq on short reads sequencers

MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples.

Andere aan macs gerelateerde pakketten

• dep: cython3 [x32]

  C-Extensions for Python 3

• dep: cython3-legacy [sparc64]

  C-Extensions for Python 3 (legacy version 0.29)

• dep: libc6 (>= 2.29) [sparc64, x32]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.38) [niet alpha, ia64, sh4, sparc64, x32]

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.30) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12) [x32]

  dep: python3 (<< 3.13) [sparc64]

  dep: python3 (<< 3.14) [niet ia64, sparc64, x32]

  dep: python3 (<< 3.9) [ia64]

  dep: python3 (>= 3.11~) [sparc64, x32]

  dep: python3 (>= 3.12~) [niet ia64, sparc64, x32]

  dep: python3 (>= 3.8~) [ia64]

• dep: python3-cykhash [niet ia64, sparc64, x32]

  cython wrapper for khash-sets/maps, efficient implementation of isin and unique

• dep: python3-hmmlearn [niet ia64, sparc64, x32]

  unsupervised learning and inference of Hidden Markov Models

• dep: python3-numpy [niet alpha, hppa, m68k, ppc64, riscv64, sh4]

  Python library for numerical computations (Python 3)

  dep: python3-numpy (>= 1:1.25.0) [alpha, hppa, m68k, ppc64, riscv64, sh4]

• dep: python3-numpy-abi9 [alpha, hppa, m68k, ppc64, riscv64, sh4]

  virtueel pakket geboden door python3-numpy

• dep: python3-numpy2-abi0 [amd64, arm64, armel, armhf, i386, ppc64el, s390x]

  virtueel pakket geboden door python3-numpy

  of python3-numpy-abi9

  virtueel pakket geboden door python3-numpy

• dep: python3-scipy [niet ia64, sparc64, x32]

  scientific tools for Python 3

• dep: python3-sklearn [niet ia64, sparc64, x32]

  Python modules for machine learning and data mining - Python 3

• dep: zlib1g (>= 1:1.1.4) [alpha, amd64, arm64, i386, ppc64, ppc64el, riscv64, s390x]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k, sh4]

macs downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	3.0.2-1+b1	3.633,6 kB	17.043,0 kB	[overzicht]
amd64	3.0.2-1+b2	3.991,8 kB	14.826,0 kB	[overzicht]
arm64	3.0.2-1+b2	3.514,3 kB	14.530,0 kB	[overzicht]
armel	3.0.2-1+b2	3.526,1 kB	14.938,0 kB	[overzicht]
armhf	3.0.2-1+b2	3.599,0 kB	11.930,0 kB	[overzicht]
hppa (unofficial port)	3.0.2-1+b1	3.632,5 kB	16.078,0 kB	[overzicht]
i386	3.0.2-1+b2	3.874,9 kB	15.910,0 kB	[overzicht]
ia64 (unofficial port)	2.2.6-3+b1	2.653,4 kB	11.172,0 kB	[overzicht]
m68k (unofficial port)	3.0.2-1	3.389,2 kB	12.726,0 kB	[overzicht]
ppc64 (unofficial port)	3.0.2-1+b1	3.652,8 kB	18.757,0 kB	[overzicht]
ppc64el	3.0.2-1+b2	3.706,6 kB	18.050,0 kB	[overzicht]
riscv64	3.0.2-1+b1	3.978,8 kB	11.515,0 kB	[overzicht]
s390x	3.0.2-1+b2	3.758,9 kB	14.902,0 kB	[overzicht]
sh4 (unofficial port)	3.0.2-1+b1	4.294,4 kB	13.553,0 kB	[overzicht]
sparc64 (unofficial port)	2.2.9.1-1+b1	2.977,6 kB	28.654,0 kB	[overzicht]
x32 (unofficial port)	2.2.9.1-1	2.527,6 kB	5.365,0 kB	[overzicht]