Pakket: ariba (2.14.7+ds-5 en anderen)

[ Bron: ariba  ]

Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::python, User Interface: Command Line, Role: role::program, scope::application, Purpose: Analysing

Andere aan ariba gerelateerde pakketten

• dep: bowtie2 [niet m68k]

  ultrafast memory-efficient short read aligner

  dep: bowtie2 (>= 2.1.0) [m68k]

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: fastaq [niet m68k]

  FASTA and FASTQ file manipulation tools

  dep: fastaq (>= 3.12.0) [m68k]

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [m68k, mips64el]

• dep: libc6.1 (>= 2.1.3) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: libfml0 (>= 0.1) [niet m68k]

  library for assembling Illumina short reads in small regions

  dep: libfml0 (>= 0.1-4~) [m68k]

• dep: libgcc-s1 (>= 3.0) [niet m68k]

  GCC support bibliotheek

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libminimap0 (>= 0.2)

  library for approximate mapping of long biosequences

• dep: libstdc++6 (>= 13.1) [niet m68k]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [m68k]

• dep: mash

  fast genome and metagenome distance estimation using MinHash

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.11) [m68k]

  dep: python3 (<< 3.13) [alpha]

  dep: python3 (<< 3.14) [niet alpha, m68k]

  dep: python3 (>= 3.12~) [niet m68k]

  dep: python3 (>= 3.9~) [m68k]

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-bs4 [m68k]

  error-tolerant HTML parser for Python 3

  dep: python3-bs4 (>= 4.1.0) [niet m68k]

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python3-pymummer [niet m68k]

  Python 3 interface to MUMmer

  dep: python3-pymummer (>= 0.10.2) [m68k]

• dep: python3-pysam [niet m68k]

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

  dep: python3-pysam (>= 0.9.1) [m68k]

• dep: python3-tk

  Tkinter - Writing Tk applications with Python 3.x

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

• sug: spades

  genome assembler for single-cell and isolates data sets

ariba downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.14.7+ds-4	1.908,0 kB	20.531,0 kB	[overzicht]
amd64	2.14.7+ds-5	1.911,4 kB	20.596,0 kB	[overzicht]
arm64	2.14.7+ds-5	1.906,3 kB	20.732,0 kB	[overzicht]
m68k (unofficial port)	2.14.6+ds-2+b1	1.910,0 kB	20.567,0 kB	[overzicht]
mips64el	2.14.7+ds-5	1.908,9 kB	20.740,0 kB	[overzicht]
ppc64el	2.14.7+ds-5	1.910,6 kB	20.732,0 kB	[overzicht]
riscv64	2.14.7+ds-5	1.909,3 kB	20.524,0 kB	[overzicht]