Pakket: mash (2.3+dfsg-6 en anderen)

[ Bron: mash  ]

fast genome and metagenome distance estimation using MinHash

Mash uses MinHash locality-sensitive hashing to reduce large biosequences to a representative sketch and rapidly estimate pairwise distances between genomes or metagenomes. Mash sketch databases effectively delineate known species boundaries, allow construction of approximate phylogenies, and can be searched in seconds using assembled genomes or raw sequencing runs from Illumina, Pacific Biosciences, and Oxford Nanopore. For metagenomics, Mash scales to thousands of samples and can replicate Human Microbiome Project and Global Ocean Survey results in a fraction of the time.

Andere aan mash gerelateerde pakketten

• dep: libc6 (>= 2.29) [hppa, m68k, sparc64, x32]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.30) [sh4]

  dep: libc6 (>= 2.34) [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: libcapnp-0.7.0 [hppa, m68k, sh4, sparc64, x32]

  Cap'n Proto C++ library

• dep: libcapnp-1.1.0 [niet hppa, m68k, sh4, sparc64, x32]

  Cap'n Proto C++ library

• dep: libgcc-s1 (>= 3.0) [niet alpha, hppa, m68k, riscv64, sh4, sparc64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 4.2) [sh4]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgsl25 (>= 2.6) [hppa, m68k, sh4, sparc64, x32]

  Pakket niet beschikbaar

• dep: libgsl28 (>= 2.8+dfsg) [niet hppa, m68k, sh4, sparc64, x32]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.6) [hppa, m68k, sh4, sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libmurmurhash2 (>= 0.2)

  Portable MurmurHash Implementation

• dep: libstdc++6 (>= 13.1) [niet hppa, m68k, sh4, sparc64, x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [hppa, m68k, sh4, sparc64, x32]

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

mash downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.3+dfsg-6+b2	177,1 kB	620,0 kB	[overzicht]
amd64	2.3+dfsg-6+b2	187,5 kB	538,0 kB	[overzicht]
arm64	2.3+dfsg-6+b2	165,3 kB	490,0 kB	[overzicht]
hppa (unofficial port)	2.2.2+dfsg-1+b1	148,4 kB	418,0 kB	[overzicht]
loong64 (unofficial port)	2.3+dfsg-6+b2	174,8 kB	490,0 kB	[overzicht]
m68k (unofficial port)	2.2.2+dfsg-1+b1	141,0 kB	423,0 kB	[overzicht]
mips64el	2.3+dfsg-6+b2	167,6 kB	635,0 kB	[overzicht]
ppc64 (unofficial port)	2.3+dfsg-6+b2	185,0 kB	618,0 kB	[overzicht]
ppc64el	2.3+dfsg-6+b2	184,5 kB	618,0 kB	[overzicht]
riscv64	2.3+dfsg-6+b3	185,7 kB	402,0 kB	[overzicht]
s390x	2.3+dfsg-6+b2	187,2 kB	546,0 kB	[overzicht]
sh4 (unofficial port)	2.2.2+dfsg-1+b1	180,6 kB	400,0 kB	[overzicht]
sparc64 (unofficial port)	2.2.2+dfsg-1+b1	123,1 kB	421,0 kB	[overzicht]
x32 (unofficial port)	2.2.2+dfsg-1+b1	147,1 kB	407,0 kB	[overzicht]