Package: fastahack (1.0.0+dfsg-11 and others)

[ Source: libfastahack  ]

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Other Packages Related to fastahack

• dep: libc6 (>= 2.38) [not alpha, ia64, loong64, sh4]

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, ia64, mips64el, ppc64el, sparc64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [not amd64, arm64, ia64, mips64el, ppc64el, sparc64]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k]

  GCC 기능 지원 라이브러리

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 기능 지원 라이브러리

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 기능 지원 라이브러리

• dep: libstdc++6 (>= 13.1)

  GNU 표준 C++ 라이브러리 v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download fastahack

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.0.0+dfsg-11+b1	12.0 kB	85.0 kB	[list of files]
amd64	1.0.0+dfsg-11+b2	12.4 kB	45.0 kB	[list of files]
arm64	1.0.0+dfsg-11+b2	11.9 kB	85.0 kB	[list of files]
armel	1.0.0+dfsg-11+b2	11.6 kB	36.0 kB	[list of files]
armhf	1.0.0+dfsg-11+b2	11.6 kB	36.0 kB	[list of files]
hppa (unofficial port)	1.0.0+dfsg-11+b1	12.1 kB	37.0 kB	[list of files]
i386	1.0.0+dfsg-11+b2	12.6 kB	44.0 kB	[list of files]
ia64 (unofficial port)	1.0.0+dfsg-11	13.3 kB	49.0 kB	[list of files]
loong64 (unofficial port)	1.0.0+dfsg-11+b1	11.8 kB	53.0 kB	[list of files]
m68k (unofficial port)	1.0.0+dfsg-11+b1	12.2 kB	44.0 kB	[list of files]
mips64el	1.0.0+dfsg-11+b2	12.1 kB	86.0 kB	[list of files]
ppc64 (unofficial port)	1.0.0+dfsg-11+b1	12.4 kB	85.0 kB	[list of files]
ppc64el	1.0.0+dfsg-11+b2	12.3 kB	85.0 kB	[list of files]
riscv64	1.0.0+dfsg-11+b2	11.7 kB	37.0 kB	[list of files]
s390x	1.0.0+dfsg-11+b2	12.0 kB	41.0 kB	[list of files]
sh4 (unofficial port)	1.0.0+dfsg-11+b1	12.8 kB	84.0 kB	[list of files]
sparc64 (unofficial port)	1.0.0+dfsg-11+b1	11.7 kB	1,046.0 kB	[list of files]
x32 (unofficial port)	1.0.0+dfsg-11+b1	12.3 kB	40.0 kB	[list of files]