Pakket: fastahack (1.0.0+dfsg-11 en anderen)

[ Bron: libfastahack  ]

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Andere aan fastahack gerelateerde pakketten

• dep: libc6 (>= 2.38) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, ia64, mips64el, ppc64el, sparc64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [niet amd64, arm64, ia64, mips64el, ppc64el, sparc64]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, hppa, ia64, m68k]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

fastahack downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.0.0+dfsg-11	11,7 kB	84,0 kB	[overzicht]
amd64	1.0.0+dfsg-11+b2	12,4 kB	45,0 kB	[overzicht]
arm64	1.0.0+dfsg-11+b2	11,9 kB	85,0 kB	[overzicht]
armel	1.0.0+dfsg-11+b2	11,6 kB	36,0 kB	[overzicht]
armhf	1.0.0+dfsg-11+b2	11,6 kB	36,0 kB	[overzicht]
hppa (unofficial port)	1.0.0+dfsg-11+b1	12,1 kB	37,0 kB	[overzicht]
i386	1.0.0+dfsg-11+b2	12,6 kB	44,0 kB	[overzicht]
ia64 (unofficial port)	1.0.0+dfsg-11	13,3 kB	49,0 kB	[overzicht]
m68k (unofficial port)	1.0.0+dfsg-11+b1	12,2 kB	44,0 kB	[overzicht]
mips64el	1.0.0+dfsg-11+b2	12,1 kB	86,0 kB	[overzicht]
ppc64 (unofficial port)	1.0.0+dfsg-11+b1	12,4 kB	85,0 kB	[overzicht]
ppc64el	1.0.0+dfsg-11+b2	12,3 kB	85,0 kB	[overzicht]
riscv64	1.0.0+dfsg-11+b2	11,7 kB	37,0 kB	[overzicht]
s390x	1.0.0+dfsg-11+b2	12,0 kB	41,0 kB	[overzicht]
sh4 (unofficial port)	1.0.0+dfsg-11+b1	12,8 kB	84,0 kB	[overzicht]
sparc64 (unofficial port)	1.0.0+dfsg-11+b1	11,7 kB	1.046,0 kB	[overzicht]
x32 (unofficial port)	1.0.0+dfsg-11+b1	12,3 kB	40,0 kB	[overzicht]