Package: python3-cyvcf2 (0.31.1-2 and others)

Links for python3-cyvcf2

Debian Resources:

Download Source Package cyvcf2:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Liubov Chuprikova (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [github.com]

Similar packages:

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

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dep: libc6 (>= 2.14) [amd64]

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dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.40) [sh4]

dep: libc6 (>= 2.7) [not alpha, amd64, arm64, ia64, ppc64el, riscv64, sh4, x32]
dep: libc6.1 (>= 2.37) [ia64]

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dep: python3 (<< 3.13) [ia64]

dep: python3 (<< 3.14) [not ia64]

dep: python3 (>= 3.11~) [ia64]

dep: python3 (>= 3.13~) [not ia64]
dep: python3-click

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dep: python3-numpy [not ia64]

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dep: python3-numpy (>= 1:1.25.0) [ia64]
dep: python3-numpy-abi9 [ia64]

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dep: python3-numpy2-abi0 [not ia64]

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or python3-numpy-abi9

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Download python3-cyvcf2

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.31.1-2+b3	850.2 kB	5,691.0 kB	[list of files]
amd64	0.31.1-2+b3	886.6 kB	5,624.0 kB	[list of files]
arm64	0.31.1-2+b3	849.1 kB	5,559.0 kB	[list of files]
armel	0.31.1-2+b3	848.3 kB	5,549.0 kB	[list of files]
armhf	0.31.1-2+b3	852.8 kB	5,357.0 kB	[list of files]
hppa (unofficial port)	0.31.1-2+b3	871.2 kB	5,942.0 kB	[list of files]
i386	0.31.1-2+b4	881.9 kB	5,645.0 kB	[list of files]
ia64 (unofficial port)	0.30.28-1+b1	1,027.9 kB	6,797.0 kB	[list of files]
m68k (unofficial port)	0.31.1-2+b3	494.1 kB	4,464.0 kB	[list of files]
mips64el	0.31.1-2+b3	825.7 kB	5,642.0 kB	[list of files]
ppc64 (unofficial port)	0.31.1-2+b3	868.6 kB	5,751.0 kB	[list of files]
ppc64el	0.31.1-2+b3	874.6 kB	5,751.0 kB	[list of files]
riscv64	0.31.1-2+b3	883.3 kB	5,403.0 kB	[list of files]
s390x	0.31.1-2+b3	864.6 kB	5,594.0 kB	[list of files]
sh4 (unofficial port)	0.31.1-2+b3	615.1 kB	4,497.0 kB	[list of files]
sparc64 (unofficial port)	0.31.1-2+b3	835.4 kB	5,823.0 kB	[list of files]
x32 (unofficial port)	0.31.1-2+b3	892.5 kB	5,570.0 kB	[list of files]