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[ Source: cyvcf2  ]

Package: python3-cyvcf2 (0.31.1-2 and others)

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VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

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Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.31.1-2 846.6 kB5,669.0 kB [list of files]
amd64 0.31.1-2 877.9 kB5,581.0 kB [list of files]
arm64 0.31.1-2 840.7 kB5,472.0 kB [list of files]
armel 0.31.1-2 843.4 kB5,482.0 kB [list of files]
armhf 0.31.1-2 846.9 kB5,278.0 kB [list of files]
hppa (unofficial port) 0.31.1-2 869.4 kB5,939.0 kB [list of files]
i386 0.31.1-2 880.5 kB5,627.0 kB [list of files]
ia64 (unofficial port) 0.30.28-1+b1 1,027.9 kB6,797.0 kB [list of files]
m68k (unofficial port) 0.31.1-2 492.2 kB4,434.0 kB [list of files]
mips64el 0.31.1-2 819.9 kB5,554.0 kB [list of files]
ppc64 (unofficial port) 0.31.1-2 864.3 kB5,728.0 kB [list of files]
ppc64el 0.31.1-2 869.0 kB5,664.0 kB [list of files]
riscv64 0.31.1-2 874.1 kB5,360.0 kB [list of files]
s390x 0.31.1-2 858.2 kB5,556.0 kB [list of files]
sh4 (unofficial port) 0.31.1-2 606.4 kB4,411.0 kB [list of files]
sparc64 (unofficial port) 0.31.1-2 831.7 kB5,800.0 kB [list of files]
x32 (unofficial port) 0.31.1-2 889.1 kB5,543.0 kB [list of files]