Package: python3-cyvcf2 (0.31.1-2 and others)

[ Source: cyvcf2  ]

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

Other Packages Related to python3-cyvcf2

• dep: libc6 (>= 2.14) [amd64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.39) [sh4]

  dep: libc6 (>= 2.7) [not alpha, amd64, arm64, ia64, ppc64el, riscv64, sh4, x32]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.11~) [ia64]

  dep: python3 (>= 3.12~) [not ia64]

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-coloredlogs

  colored terminal output for Python 3's logging module

• dep: python3-numpy (>= 1:1.25.0)

  Fast array facility to the Python language (Python 3)

• dep: python3-numpy-abi9

  virtual package provided by python3-numpy

Download python3-cyvcf2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.31.1-2	846.6 kB	5,669.0 kB	[list of files]
amd64	0.31.1-2	877.9 kB	5,581.0 kB	[list of files]
arm64	0.31.1-2	840.7 kB	5,472.0 kB	[list of files]
armel	0.31.1-2	843.4 kB	5,482.0 kB	[list of files]
armhf	0.31.1-2	846.9 kB	5,278.0 kB	[list of files]
hppa (unofficial port)	0.31.1-2	869.4 kB	5,939.0 kB	[list of files]
i386	0.31.1-2	880.5 kB	5,627.0 kB	[list of files]
ia64 (unofficial port)	0.30.28-1+b1	1,027.9 kB	6,797.0 kB	[list of files]
m68k (unofficial port)	0.31.1-2	492.2 kB	4,434.0 kB	[list of files]
mips64el	0.31.1-2	819.9 kB	5,554.0 kB	[list of files]
ppc64 (unofficial port)	0.31.1-2	864.3 kB	5,728.0 kB	[list of files]
ppc64el	0.31.1-2	869.0 kB	5,664.0 kB	[list of files]
riscv64	0.31.1-2	874.1 kB	5,360.0 kB	[list of files]
s390x	0.31.1-2	858.2 kB	5,556.0 kB	[list of files]
sh4 (unofficial port)	0.31.1-2	606.4 kB	4,411.0 kB	[list of files]
sparc64 (unofficial port)	0.31.1-2	831.7 kB	5,800.0 kB	[list of files]
x32 (unofficial port)	0.31.1-2	889.1 kB	5,543.0 kB	[list of files]