Paketti: r-bioc-deseq2 (1.46.0+dfsg-2 ja muut)

[ Source: r-bioc-deseq2  ]

R package for RNA-Seq Differential Expression Analysis

Differential gene expression analysis based on the negative binomial distribution. Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

Muut pakettiin r-bioc-deseq2 liittyvät paketit

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  tai libblas.so.3

  näennäispaketti, jonka toteuttaa libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.29) [ei alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [ei hppa, ia64, sh4]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.3.4) [sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC:n apukirjasto

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  tai liblapack.so.3

  näennäispaketti, jonka toteuttaa libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 13.1) [hppa, ia64, sh4]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 14) [ei hppa, ia64, sh4, x32]

  dep: libstdc++6 (>= 9) [x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketti ei saatavilla

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Paketti ei saatavilla

• dep: r-api-bioc-3.20 [ei hppa, ia64, sh4, x32]

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.7.5)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-geneplotter [x32]

  R package of functions for plotting genomic data

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-matrixgenerics [ei x32]

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

• dep: r-bioc-s4vectors (>= 0.23.18)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.1.6)

  BioConductor assay container

• dep: r-cran-ggplot2 [x32]

  implementation of the Grammar of Graphics

  dep: r-cran-ggplot2 (>= 3.4.0) [ei x32]

• dep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcpp (>= 0.11.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcpparmadillo

  GNU R package for Armadillo C++ linear algebra library

• sug: r-bioc-glmgampoi

  GNU R fit a Gamma-Poisson generalized linear model

• sug: r-bioc-tximeta

  Transcript Quantification Import with Automatic Metadata

• sug: r-bioc-tximport

  transcript-level estimates for biological sequencing

• sug: r-bioc-tximportdata

  GNU R various transcript abundance quantifiers

• sug: r-cran-biocmanager

  access the Bioconductor project package repository

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

Imuroi r-bioc-deseq2

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.46.0+dfsg-2	1,247.8 kt	1,756.0 kt	[tiedostoluettelo]
amd64	1.46.0+dfsg-2	1,256.6 kt	1,749.0 kt	[tiedostoluettelo]
arm64	1.46.0+dfsg-2	1,242.7 kt	1,757.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	1.42.1+dfsg-1	1,234.4 kt	1,718.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	1.42.1+dfsg-1	1,254.7 kt	1,916.0 kt	[tiedostoluettelo]
mips64el	1.46.0+dfsg-2	1,246.0 kt	1,765.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.46.0+dfsg-2	1,257.1 kt	1,825.0 kt	[tiedostoluettelo]
ppc64el	1.46.0+dfsg-2	1,256.0 kt	1,821.0 kt	[tiedostoluettelo]
riscv64	1.46.0+dfsg-2	1,253.6 kt	1,692.0 kt	[tiedostoluettelo]
s390x	1.46.0+dfsg-2	1,257.6 kt	1,757.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.42.1+dfsg-1	1,256.3 kt	1,738.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.46.0+dfsg-2	1,239.5 kt	2,531.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.38.3+dfsg-1	1,258.9 kt	1,736.0 kt	[tiedostoluettelo]