Paketti: r-bioc-genomicranges (1.56.1+dfsg-1)

[ Source: r-bioc-genomicranges  ]

BioConductor representation and manipulation of genomic intervals

The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

Muut pakettiin r-bioc-genomicranges liittyvät paketit

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [amd64, mips64el, s390x]

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.19

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.44.0)

  BioConductor representation and manpulation of external sequences

• sug: r-bioc-annotate (>= 1.82.0)

  BioConductor annotation for microarrays

• sug: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-annotationhub (>= 3.12.0)

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biobase (>= 2.64.0)

  base functions for Bioconductor

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• sug: r-bioc-bsgenome (>= 1.72.0)

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2 (>= 1.44.0)

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-dexseq (>= 1.50.0)

  GNU R inference of differential exon usage in RNA-Seq

• sug: r-bioc-edger (>= 4.2.0)

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicalignments (>= 1.40.0)

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures (>= 1.56.0)

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-gviz (>= 1.48.0)

  Plotting data and annotation information along genomic coordinates

• sug: r-bioc-keggrest (>= 1.44.1)

  GNU R client-side REST access to KEGG

• sug: r-bioc-rsamtools (>= 2.20.0)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer (>= 1.64.0)

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-summarizedexperiment (>= 1.34.0)

  BioConductor assay container

• sug: r-bioc-variantannotation (>= 1.50.0)

  BioConductor annotation of genetic variants

• sug: r-cran-digest

  GNU R package for 'hash digest' of R data structures

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-runit

  GNU R package providing unit testing framework

Imuroi r-bioc-genomicranges

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	1,799.1 kt	2,804.0 kt	[tiedostoluettelo]
arm64	1,798.7 kt	2,820.0 kt	[tiedostoluettelo]
mips64el	1,797.4 kt	2,825.0 kt	[tiedostoluettelo]
ppc64el	1,799.0 kt	2,820.0 kt	[tiedostoluettelo]
riscv64	1,798.9 kt	2,796.0 kt	[tiedostoluettelo]
s390x	1,798.2 kt	2,804.0 kt	[tiedostoluettelo]