Package: damapper (0.0+git20240314.b025cf9-1 and others)

[ Source: damapper  ]

long read to reference genome mapping tool

Recognised as the Damapper Library, this is a long read to reference genome mapping command line tool.

For a given reference database 'X' and read block 'Y', damapper produces the single file 'Y.X.las'. Each output file is sorted in order of the A-reads, and if a match is a chain of local alignments, then the LA's in the chain occur in increasing order of A-coordinates.

HPC.damapper writes a UNIX shell script to the standard output that maps every read in blocks <first> to <last> of database <reads> to a reference sequence <ref>. If <last> is missing then only the single block <first> is mapped, and if <first> is also missing then all blocks of the database are mapped.

This package contains the damapper and HPC.damapper binaries.

Other Packages Related to damapper

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.39) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

Download damapper

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.0+git20240314.b025cf9-1	104.9 kB	428.0 kB	[list of files]
amd64	0.0+git20240314.b025cf9-1	109.3 kB	316.0 kB	[list of files]
arm64	0.0+git20240314.b025cf9-1	96.8 kB	364.0 kB	[list of files]
armel	0.0+git20240314.b025cf9-1	98.1 kB	302.0 kB	[list of files]
armhf	0.0+git20240314.b025cf9-1	97.4 kB	226.0 kB	[list of files]
hppa (unofficial port)	0.0+git20240314.b025cf9-1	103.7 kB	308.0 kB	[list of files]
i386	0.0+git20240314.b025cf9-1	109.5 kB	346.0 kB	[list of files]
ia64 (unofficial port)	0.0+git20210330.ab45103-2	128.4 kB	549.0 kB	[list of files]
m68k (unofficial port)	0.0+git20240314.b025cf9-1	95.0 kB	298.0 kB	[list of files]
mips64el	0.0+git20240314.b025cf9-1	100.2 kB	437.0 kB	[list of files]
ppc64 (unofficial port)	0.0+git20240314.b025cf9-1	111.2 kB	428.0 kB	[list of files]
ppc64el	0.0+git20240314.b025cf9-1	112.4 kB	428.0 kB	[list of files]
riscv64	0.0+git20240314.b025cf9-1	106.6 kB	248.0 kB	[list of files]
s390x	0.0+git20240314.b025cf9-1	116.5 kB	336.0 kB	[list of files]
sh4 (unofficial port)	0.0+git20240314.b025cf9-1	120.6 kB	298.0 kB	[list of files]
sparc64 (unofficial port)	0.0+git20240314.b025cf9-1	95.8 kB	2,094.0 kB	[list of files]
x32 (unofficial port)	0.0+git20240314.b025cf9-1	106.3 kB	298.0 kB	[list of files]