Package: mafft (7.505-1 and others)

Links for mafft

Debian Resources:

Download Source Package mafft:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [mafft.cbrc.jp]

Similar packages:

Program til justering af flere aminosyrer eller nukleotide sekvenser

MAFFT er et program til justering af flere sekvenser, der tilbyder tre præcisionsorienterede metoder:

  * L-INS-i (nok mest præcis, anbefales for <200 sekvenser;
    iterativ raffineringsmetode som indarbejder information om lokal
    parvis justering),
  * G-INS-i (egnet til sekvenser af samme længder; anbefales til
    <200 sekvenser; iterativ raffineringsmetode til at indarbejde
    information om den globalt parvise justering),
  * E-INS-i (egnet til sekvenser, der indeholder store regioner som ikke
    kan justeres; anbefales til <200 sekvenser),

og fem hastigheds-orienterede metoder:

  * FFT-NS-i (iterativ raffineringsmetode; blot to cyklusser),
  * FFT-NS-i (iterativ raffineringmetode; maks. 1000 gentagelser),
  * FFT-NS-2 (hurtig; progressiv metode),
  * FFT-NS-1 (meget hurtig; anbefales til >2000 sekvenser; progressiv
    metode med en groft vejledende træ),
  * NW-NS-PartTree-1 (anbefales til ~50.000 sekvenser; progressiv
    metoden med PartTree-algoritmen).

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Biological Sequence

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Download mafft

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	7.505-1	1,032.8 kB	15,184.0 kB	[list of files]
amd64	7.505-1	1,052.5 kB	11,920.0 kB	[list of files]
arm64	7.505-1+b1	937.9 kB	12,408.0 kB	[list of files]
armel	7.505-1	916.0 kB	12,403.0 kB	[list of files]
armhf	7.505-1	765.3 kB	9,139.0 kB	[list of files]
hppa (unofficial port)	7.505-1	890.5 kB	11,092.0 kB	[list of files]
i386	7.505-1	983.3 kB	13,119.0 kB	[list of files]
ia64 (unofficial port)	7.505-1	1,103.2 kB	24,053.0 kB	[list of files]
m68k (unofficial port)	7.505-1	968.3 kB	10,923.0 kB	[list of files]
mips64el	7.505-1	873.9 kB	14,427.0 kB	[list of files]
ppc64 (unofficial port)	7.505-1	1,036.3 kB	16,784.0 kB	[list of files]
ppc64el	7.505-1	1,019.2 kB	16,336.0 kB	[list of files]
riscv64	7.505-1+b1	1,085.5 kB	9,760.0 kB	[list of files]
s390x	7.505-1	891.0 kB	13,010.0 kB	[list of files]
sh4 (unofficial port)	7.505-1	879.0 kB	11,959.0 kB	[list of files]
sparc64 (unofficial port)	7.505-1	1,056.5 kB	33,604.0 kB	[list of files]
x32 (unofficial port)	7.505-1	1,041.3 kB	11,379.0 kB	[list of files]