[ 源代码: skewer ]
软件包:skewer(0.2.2-2)
post-processing of high-throughput DNA sequence reads
skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.
Features
* Detection and removal of adapter sequences * Insertion and deletion allowed in pattern matching * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads * Demultiplexing of barcoded sequencing runs * Multi-threading support * Trimming based on phred quality scores * IUPAC characters for barcodes and adapters * Compressed input and output support
其他与 skewer 有关的软件包
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- dep: libc6 (>= 2.17)
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386, mipsel]
- GCC 支持库
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
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- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库,第3版
下载 skewer
硬件架构 | 软件包大小 | 安装后大小 | 文件 |
---|---|---|---|
amd64 | 68.2 kB | 198.0 kB | [文件列表] |
arm64 | 59.4 kB | 166.0 kB | [文件列表] |
armel | 58.8 kB | 174.0 kB | [文件列表] |
armhf | 60.4 kB | 130.0 kB | [文件列表] |
i386 | 71.0 kB | 214.0 kB | [文件列表] |
mips64el | 63.4 kB | 212.0 kB | [文件列表] |
mipsel | 65.1 kB | 206.0 kB | [文件列表] |
ppc64el | 65.9 kB | 211.0 kB | [文件列表] |
s390x | 60.9 kB | 194.0 kB | [文件列表] |