Package: skewer (0.2.2-2)

[ Source: skewer  ]

post-processing of high-throughput DNA sequence reads

skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.

Features

 * Detection and removal of adapter sequences
 * Insertion and deletion allowed in pattern matching
 * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
 * Demultiplexing of barcoded sequencing runs
 * Multi-threading support
 * Trimming based on phred quality scores
 * IUPAC characters for barcodes and adapters
 * Compressed input and output support

Other Packages Related to skewer

• dep: libc6 (>= 2.17)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

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Architecture	Package Size	Installed Size	Files
amd64	68.2 kB	198.0 kB	[list of files]
arm64	59.4 kB	166.0 kB	[list of files]
armel	58.8 kB	174.0 kB	[list of files]
armhf	60.4 kB	130.0 kB	[list of files]
i386	71.0 kB	214.0 kB	[list of files]
mips64el	63.4 kB	212.0 kB	[list of files]
mipsel	65.1 kB	206.0 kB	[list of files]
ppc64el	65.9 kB	211.0 kB	[list of files]
s390x	60.9 kB	194.0 kB	[list of files]