Pakket: skewer (0.2.2-2)

[ Bron: skewer  ]

post-processing of high-throughput DNA sequence reads

skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.

Features

 * Detection and removal of adapter sequences
 * Insertion and deletion allowed in pattern matching
 * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
 * Demultiplexing of barcoded sequencing runs
 * Multi-threading support
 * Trimming based on phred quality scores
 * IUPAC characters for barcodes and adapters
 * Compressed input and output support

Andere aan skewer gerelateerde pakketten

• dep: libc6 (>= 2.17)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

skewer downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	68,2 kB	198,0 kB	[overzicht]
arm64	59,4 kB	166,0 kB	[overzicht]
armel	58,8 kB	174,0 kB	[overzicht]
armhf	60,4 kB	130,0 kB	[overzicht]
i386	71,0 kB	214,0 kB	[overzicht]
mips64el	63,4 kB	212,0 kB	[overzicht]
mipsel	65,1 kB	206,0 kB	[overzicht]
ppc64el	65,9 kB	211,0 kB	[overzicht]
s390x	60,9 kB	194,0 kB	[overzicht]