[ Source: r-bioc-grohmm ]
Пакунок: r-bioc-grohmm (1.38.0-1 and others)
Links for r-bioc-grohmm
Debian Resources:
Download Source Package r-bioc-grohmm:
- [r-bioc-grohmm_1.38.0-1.dsc]
- [r-bioc-grohmm_1.38.0.orig.tar.gz]
- [r-bioc-grohmm_1.38.0-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
GRO-seq Analysis Pipeline
This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).
The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.
Інші пакунки пов'язані з r-bioc-grohmm
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- dep: libc6 (>= 2.16) [x32]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.2) [hppa]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [amd64, mips64el, ppc64, s390x]
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- dep: libc6.1 (>= 2.1.3) [alpha]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: r-api-4.0
- virtual package provided by r-base-core
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- dep: r-api-bioc-3.16 [x32]
- Пакунок недоступний
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- dep: r-api-bioc-3.18 [hppa, ia64, sh4]
- Пакунок недоступний
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- dep: r-api-bioc-3.19 [not hppa, ia64, sh4, x32]
- virtual package provided by r-bioc-biocgenerics
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- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-genomeinfodb [hppa, ia64, sh4, x32]
- BioConductor utilities for manipulating chromosome identifiers
- dep: r-bioc-genomeinfodb (>= 1.40.1) [not hppa, ia64, sh4, x32]
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- dep: r-bioc-genomicalignments (>= 1.15.6) [hppa, ia64, sh4, x32]
- BioConductor representation and manipulation of short genomic alignments
- dep: r-bioc-genomicalignments (>= 1.40.0) [not hppa, ia64, sh4, x32]
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- dep: r-bioc-genomicranges (>= 1.31.8) [hppa, ia64, sh4, x32]
- BioConductor representation and manipulation of genomic intervals
- dep: r-bioc-genomicranges (>= 1.56.1) [not hppa, ia64, sh4, x32]
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- dep: r-bioc-iranges (>= 2.13.12) [hppa, ia64, sh4, x32]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.38.1) [not hppa, ia64, sh4, x32]
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- dep: r-bioc-rtracklayer (>= 1.39.7) [hppa, ia64, sh4, x32]
- GNU R interface to genome browsers and their annotation tracks
- dep: r-bioc-rtracklayer (>= 1.64.0) [not hppa, ia64, sh4, x32]
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- dep: r-bioc-s4vectors (>= 0.17.25) [hppa, ia64, sh4, x32]
- BioConductor S4 implementation of vectors and lists
- dep: r-bioc-s4vectors (>= 0.42.1) [not hppa, ia64, sh4, x32]
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- dep: r-cran-mass
- GNU R package of Venables and Ripley's MASS
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- sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]
- standard styles for vignettes and other Bioconductor documents
- sug: r-bioc-biocstyle (>= 2.32.1) [not hppa, ia64, sh4, x32]
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- sug: r-bioc-edger [hppa, ia64, sh4, x32]
- Empirical analysis of digital gene expression data in R
- sug: r-bioc-edger (>= 4.2.1) [not hppa, ia64, sh4, x32]
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- sug: r-bioc-genomicfeatures [hppa, ia64, sh4, x32]
- GNU R tools for making and manipulating transcript centric annotations
- sug: r-bioc-genomicfeatures (>= 1.56.0) [not hppa, ia64, sh4, x32]
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- sug: r-bioc-org.hs.eg.db [hppa, ia64, sh4, x32]
- genome-wide annotation for Human
- sug: r-bioc-org.hs.eg.db (>= 3.19.1) [not hppa, ia64, sh4, x32]
Завантажити r-bioc-grohmm
| Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|---|
| alpha (unofficial port) | 1.38.0-1 | 4,345.0 kB | 4,523.0 kB | [список файлів] |
| amd64 | 1.38.0-1 | 4,344.9 kB | 4,515.0 kB | [список файлів] |
| arm64 | 1.38.0-1 | 4,342.8 kB | 4,523.0 kB | [список файлів] |
| hppa (unofficial port) | 1.36.0-1 | 4,343.5 kB | 4,516.0 kB | [список файлів] |
| ia64 (unofficial port) | 1.36.0-1 | 4,349.2 kB | 4,558.0 kB | [список файлів] |
| mips64el | 1.38.0-1 | 4,342.9 kB | 4,526.0 kB | [список файлів] |
| ppc64 (unofficial port) | 1.38.0-1 | 4,347.8 kB | 4,588.0 kB | [список файлів] |
| ppc64el | 1.38.0-1 | 4,348.2 kB | 4,523.0 kB | [список файлів] |
| riscv64 | 1.38.0-1 | 4,344.5 kB | 4,499.0 kB | [список файлів] |
| s390x | 1.38.0-1 | 4,346.0 kB | 4,515.0 kB | [список файлів] |
| sh4 (unofficial port) | 1.36.0-1 | 4,344.3 kB | 4,522.0 kB | [список файлів] |
| x32 (unofficial port) | 1.32.0-1 | 4,332.9 kB | 4,498.0 kB | [список файлів] |