[ Source: r-bioc-genomicalignments ]
Пакунок: r-bioc-genomicalignments (1.40.0-1 and others)
Links for r-bioc-genomicalignments
Debian Resources:
Download Source Package r-bioc-genomicalignments:
- [r-bioc-genomicalignments_1.40.0-1.dsc]
- [r-bioc-genomicalignments_1.40.0.orig.tar.gz]
- [r-bioc-genomicalignments_1.40.0-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
Інші пакунки пов'язані з r-bioc-genomicalignments
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- dep: libc6 (>= 2.16) [x32]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.3) [hppa]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]
-
- dep: libc6.1 (>= 2.37) [ia64]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.4) [alpha]
-
- dep: r-api-3.4 [m68k]
- Пакунок недоступний
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- dep: r-api-3.5 [sparc64]
- Пакунок недоступний
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- dep: r-api-4.0 [not m68k, sparc64]
- virtual package provided by r-base-core
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- dep: r-api-bioc-3.16 [x32]
- Пакунок недоступний
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- dep: r-api-bioc-3.18 [hppa, ia64, sh4]
- Пакунок недоступний
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- dep: r-api-bioc-3.19 [not hppa, ia64, m68k, sh4, sparc64, x32]
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-api-bioc-3.8 [sparc64]
- Пакунок недоступний
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- dep: r-base-core (>= 3.4.3-1) [m68k]
- GNU R core of statistical computation and graphics system
- dep: r-base-core (>= 3.5.2-1) [sparc64]
- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
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- dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]
- generic functions for Bioconductor
- dep: r-bioc-biocgenerics (>= 0.37.0) [hppa, ia64, sh4, x32]
- dep: r-bioc-biocgenerics (>= 0.50.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-biocparallel [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor facilities for parallel evaluation
- dep: r-bioc-biocparallel (>= 1.38.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-biostrings (>= 2.37.1) [m68k]
- GNU R string objects representing biological sequences
- dep: r-bioc-biostrings (>= 2.47.6) [sparc64]
- dep: r-bioc-biostrings (>= 2.55.7) [hppa, ia64, sh4, x32]
- dep: r-bioc-biostrings (>= 2.72.1) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-genomeinfodb (>= 1.13.1) [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor utilities for manipulating chromosome identifiers
- dep: r-bioc-genomeinfodb (>= 1.40.1) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-genomicranges (>= 1.29.14) [m68k]
- BioConductor representation and manipulation of genomic intervals
- dep: r-bioc-genomicranges (>= 1.33.4) [sparc64]
- dep: r-bioc-genomicranges (>= 1.41.5) [hppa, ia64, sh4, x32]
- dep: r-bioc-genomicranges (>= 1.56.1) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-iranges (>= 2.11.16) [m68k]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.15.12) [sparc64]
- dep: r-bioc-iranges (>= 2.23.9) [hppa, ia64, sh4, x32]
- dep: r-bioc-iranges (>= 2.38.1) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-rsamtools (>= 1.21.4) [m68k]
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
- dep: r-bioc-rsamtools (>= 1.31.2) [hppa, ia64, sh4, sparc64, x32]
- dep: r-bioc-rsamtools (>= 2.20.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-s4vectors (>= 0.13.13) [m68k]
- BioConductor S4 implementation of vectors and lists
- dep: r-bioc-s4vectors (>= 0.19.11) [sparc64]
- dep: r-bioc-s4vectors (>= 0.27.12) [hppa, ia64, sh4, x32]
- dep: r-bioc-s4vectors (>= 0.42.1) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-summarizedexperiment (>= 1.34.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor assay container
- dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]
- dep: r-bioc-summarizedexperiment (>= 1.9.13) [hppa, ia64, sh4, sparc64, x32]
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- rec: r-bioc-shortread (>= 1.24.0)
- GNU R classes and methods for high-throughput short-read sequencing data
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- rec: r-cran-runit
- GNU R package providing unit testing framework
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- sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]
- standard styles for vignettes and other Bioconductor documents
- sug: r-bioc-biocstyle (>= 2.32.1) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-bsgenome [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor infrastructure for Biostrings-based genome data packages
- sug: r-bioc-bsgenome (>= 1.72.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-bioc-deseq2 [hppa, ia64, sh4, x32]
- R package for RNA-Seq Differential Expression Analysis
- sug: r-bioc-deseq2 (>= 1.44.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-edger [hppa, ia64, m68k, sh4, x32]
- Empirical analysis of digital gene expression data in R
- sug: r-bioc-edger (>= 4.2.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R tools for making and manipulating transcript centric annotations
- sug: r-bioc-genomicfeatures (>= 1.56.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-rtracklayer [hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R interface to genome browsers and their annotation tracks
- sug: r-bioc-rtracklayer (>= 1.64.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-shortread [hppa, ia64, m68k, sh4, x32]
- GNU R classes and methods for high-throughput short-read sequencing data
- sug: r-bioc-shortread (>= 1.62.0) [not hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-cran-knitr [not hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-runit [not sparc64]
- GNU R package providing unit testing framework
Завантажити r-bioc-genomicalignments
| Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|---|
| alpha (unofficial port) | 1.40.0-1 | 2,109.1 kB | 3,447.0 kB | [список файлів] |
| amd64 | 1.40.0-1 | 2,109.8 kB | 3,391.0 kB | [список файлів] |
| arm64 | 1.40.0-1 | 2,109.3 kB | 3,447.0 kB | [список файлів] |
| hppa (unofficial port) | 1.38.2-1 | 2,092.9 kB | 2,965.0 kB | [список файлів] |
| ia64 (unofficial port) | 1.38.2-1 | 2,095.1 kB | 3,004.0 kB | [список файлів] |
| m68k (unofficial port) | 1.14.0-1 | 1,648.5 kB | 2,183.0 kB | [список файлів] |
| mips64el | 1.40.0-1 | 2,107.1 kB | 3,453.0 kB | [список файлів] |
| ppc64 (unofficial port) | 1.40.0-1 | 2,112.2 kB | 3,448.0 kB | [список файлів] |
| ppc64el | 1.40.0-1 | 2,111.0 kB | 3,447.0 kB | [список файлів] |
| riscv64 | 1.40.0-1 | 2,109.6 kB | 3,379.0 kB | [список файлів] |
| s390x | 1.40.0-1 | 2,109.0 kB | 3,391.0 kB | [список файлів] |
| sh4 (unofficial port) | 1.38.2-1 | 2,091.9 kB | 2,955.0 kB | [список файлів] |
| sparc64 (unofficial port) | 1.18.1-1 | 2,048.6 kB | 2,867.0 kB | [список файлів] |
| x32 (unofficial port) | 1.34.0-1 | 2,063.0 kB | 2,904.0 kB | [список файлів] |