软件包：r-bioc-grohmm（1.38.0-1 以及其他的）

[ 源代码： r-bioc-grohmm  ]

GRO-seq Analysis Pipeline

This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).

The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.

其他与 r-bioc-grohmm 有关的软件包

• dep: libc6 (>= 2.16) [x32]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [hppa]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [amd64, mips64el, ppc64, s390x]

• dep: libc6.1 (>= 2.1.3) [alpha]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: r-api-4.0

  本虚包由这些包填实： r-base-core

• dep: r-api-bioc-3.16 [x32]

  软件包暂时不可用

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  软件包暂时不可用

• dep: r-api-bioc-3.19 [除 hppa, ia64, sh4, x32]

  本虚包由这些包填实： r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-genomeinfodb [hppa, ia64, sh4, x32]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.40.1) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-genomicalignments (>= 1.15.6) [hppa, ia64, sh4, x32]

  BioConductor representation and manipulation of short genomic alignments

  dep: r-bioc-genomicalignments (>= 1.40.0) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-genomicranges (>= 1.31.8) [hppa, ia64, sh4, x32]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.56.1) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-iranges (>= 2.13.12) [hppa, ia64, sh4, x32]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.38.1) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-rtracklayer (>= 1.39.7) [hppa, ia64, sh4, x32]

  GNU R interface to genome browsers and their annotation tracks

  dep: r-bioc-rtracklayer (>= 1.64.0) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-s4vectors (>= 0.17.25) [hppa, ia64, sh4, x32]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.42.1) [除 hppa, ia64, sh4, x32]

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [除 hppa, ia64, sh4, x32]

• sug: r-bioc-edger [hppa, ia64, sh4, x32]

  Empirical analysis of digital gene expression data in R

  sug: r-bioc-edger (>= 4.2.1) [除 hppa, ia64, sh4, x32]

• sug: r-bioc-genomicfeatures [hppa, ia64, sh4, x32]

  GNU R tools for making and manipulating transcript centric annotations

  sug: r-bioc-genomicfeatures (>= 1.56.0) [除 hppa, ia64, sh4, x32]

• sug: r-bioc-org.hs.eg.db [hppa, ia64, sh4, x32]

  genome-wide annotation for Human

  sug: r-bioc-org.hs.eg.db (>= 3.19.1) [除 hppa, ia64, sh4, x32]

下载 r-bioc-grohmm

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	1.38.0-1	4,345.0 kB	4,523.0 kB	[文件列表]
amd64	1.38.0-1	4,344.9 kB	4,515.0 kB	[文件列表]
arm64	1.38.0-1	4,342.8 kB	4,523.0 kB	[文件列表]
hppa （非官方移植版）	1.36.0-1	4,343.5 kB	4,516.0 kB	[文件列表]
ia64 （非官方移植版）	1.36.0-1	4,349.2 kB	4,558.0 kB	[文件列表]
mips64el	1.38.0-1	4,342.9 kB	4,526.0 kB	[文件列表]
ppc64 （非官方移植版）	1.38.0-1	4,347.8 kB	4,588.0 kB	[文件列表]
ppc64el	1.38.0-1	4,348.2 kB	4,523.0 kB	[文件列表]
riscv64	1.38.0-1	4,344.5 kB	4,499.0 kB	[文件列表]
s390x	1.38.0-1	4,346.0 kB	4,515.0 kB	[文件列表]
sh4 （非官方移植版）	1.36.0-1	4,344.3 kB	4,522.0 kB	[文件列表]
x32 （非官方移植版）	1.32.0-1	4,332.9 kB	4,498.0 kB	[文件列表]