Paket: nanopolish (0.13.2-3)

[ Källkod: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Andra paket besläktade med nanopolish

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [ej armel, armhf, mipsel, ppc64el]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-103-1

  HDF5 C runtime files - serial version

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 9)

  GNU standardbibliotek v3 för C++

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [ej arm64]

  Kompressionsbibliotek - körtidspaket

  dep: zlib1g (>= 1:1.2.3.3) [arm64]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

Hämta nanopolish

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	2.199,8 kbyte	9.539,0 kbyte	[filförteckning]
arm64	2.130,2 kbyte	9.334,0 kbyte	[filförteckning]
armel	2.126,7 kbyte	9.405,0 kbyte	[filförteckning]
armhf	2.141,1 kbyte	8.985,0 kbyte	[filförteckning]
i386	2.247,0 kbyte	9.797,0 kbyte	[filförteckning]
mips64el	2.140,4 kbyte	9.757,0 kbyte	[filförteckning]
mipsel	2.163,9 kbyte	9.796,0 kbyte	[filförteckning]
ppc64el	2.202,2 kbyte	9.795,0 kbyte	[filförteckning]
s390x	2.134,3 kbyte	9.626,0 kbyte	[filförteckning]