Paketti: vcfanno (0.3.5+ds-2 ja muut)

[ Source: vcfanno  ]

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Muut pakettiin vcfanno liittyvät paketit

• dep: libc6 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

Imuroi vcfanno

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	0.3.5+ds-2+b6	2,621.0 kt	8,036.0 kt	[tiedostoluettelo]
arm64	0.3.5+ds-2+b6	2,234.4 kt	7,560.0 kt	[tiedostoluettelo]
armel	0.3.5+ds-2+b6	2,315.1 kt	7,827.0 kt	[tiedostoluettelo]
armhf	0.3.5+ds-2+b6	2,306.9 kt	7,827.0 kt	[tiedostoluettelo]
i386	0.3.5+ds-2+b6	2,495.9 kt	7,775.0 kt	[tiedostoluettelo]
mips64el	0.3.5+ds-2+b6	2,095.0 kt	8,859.0 kt	[tiedostoluettelo]
ppc64el	0.3.5+ds-2+b6	2,227.2 kt	7,880.0 kt	[tiedostoluettelo]
riscv64	0.3.5+ds-2+b6	2,322.3 kt	7,624.0 kt	[tiedostoluettelo]
s390x	0.3.5+ds-2+b6	2,383.6 kt	8,520.0 kt	[tiedostoluettelo]