Paquet : vcfanno (0.3.5+ds-2 et autres)

[ Paquet source : vcfanno  ]

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Autres paquets associés à vcfanno

• dep: libc6 (>= 2.34)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

Télécharger vcfanno

Télécharger pour toutes les architectures proposées

Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	0.3.5+ds-2+b8	2 621,3 ko	8 040,0 ko	[liste des fichiers]
arm64	0.3.5+ds-2+b8	2 233,5 ko	7 560,0 ko	[liste des fichiers]
armel	0.3.5+ds-2+b8	2 312,6 ko	7 827,0 ko	[liste des fichiers]
armhf	0.3.5+ds-2+b8	2 306,5 ko	7 827,0 ko	[liste des fichiers]
i386	0.3.5+ds-2+b8	2 499,6 ko	7 780,0 ko	[liste des fichiers]
mips64el	0.3.5+ds-2+b8	2 095,4 ko	8 859,0 ko	[liste des fichiers]
ppc64el	0.3.5+ds-2+b8	2 227,6 ko	7 880,0 ko	[liste des fichiers]
riscv64	0.3.5+ds-2+b8	2 324,3 ko	7 624,0 ko	[liste des fichiers]
s390x	0.3.5+ds-2+b8	2 385,3 ko	8 520,0 ko	[liste des fichiers]