[ ソース: vcfanno ]
パッケージ: vcfanno (0.3.5+ds-2 など)
annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.
その他の vcfanno 関連パッケージ
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
vcfanno のダウンロード
| アーキテクチャ | バージョン | パッケージサイズ | インストールサイズ | ファイル |
|---|---|---|---|---|
| amd64 | 0.3.5+ds-2+b3 | 2,528.3 kB | 7,618.0 kB | [ファイル一覧] |
| arm64 | 0.3.5+ds-2+b3 | 2,167.3 kB | 7,282.0 kB | [ファイル一覧] |
| armel | 0.3.5+ds-2+b3 | 2,150.3 kB | 7,421.0 kB | [ファイル一覧] |
| armhf | 0.3.5+ds-2+b3 | 2,142.7 kB | 7,357.0 kB | [ファイル一覧] |
| i386 | 0.3.5+ds-2+b3 | 2,325.6 kB | 7,334.0 kB | [ファイル一覧] |
| mips64el | 0.3.5+ds-2+b3 | 1,943.9 kB | 8,325.0 kB | [ファイル一覧] |
| ppc64el | 0.3.5+ds-2+b3 | 2,155.0 kB | 7,537.0 kB | [ファイル一覧] |
| riscv64 | 0.3.5+ds-2+b3 | 2,154.8 kB | 7,217.0 kB | [ファイル一覧] |
| s390x | 0.3.5+ds-2+b3 | 2,304.8 kB | 8,114.0 kB | [ファイル一覧] |