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[ 源代码： vcfanno  ]

软件包：vcfanno（0.3.5+ds-2 以及其他的）

vcfanno 的相关链接

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annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF. 

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

其他与 vcfanno 有关的软件包

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下载 vcfanno

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
amd64 0.3.5+ds-2+b6 2,621.0 kB8,036.0 kB [文件列表]
arm64 0.3.5+ds-2+b6 2,234.4 kB7,560.0 kB [文件列表]
armel 0.3.5+ds-2+b6 2,315.1 kB7,827.0 kB [文件列表]
armhf 0.3.5+ds-2+b6 2,306.9 kB7,827.0 kB [文件列表]
i386 0.3.5+ds-2+b6 2,495.9 kB7,775.0 kB [文件列表]
mips64el 0.3.5+ds-2+b6 2,095.0 kB8,859.0 kB [文件列表]
ppc64el 0.3.5+ds-2+b6 2,227.2 kB7,880.0 kB [文件列表]
riscv64 0.3.5+ds-2+b6 2,322.3 kB7,624.0 kB [文件列表]
s390x 0.3.5+ds-2+b6 2,383.6 kB8,520.0 kB [文件列表]