Pakket: r-cran-spp (1.16.0-2 en anderen)

[ Bron: r-cran-spp  ]

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

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  dep: libc6 (>= 2.38) [arm64]

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  dep: libgcc-s1 (>= 4.2) [ia64]

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r-cran-spp downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.16.0-2	316,0 kB	473,0 kB	[overzicht]
amd64	1.16.0-2	315,3 kB	453,0 kB	[overzicht]
arm64	1.16.0-2+b1	315,1 kB	436,0 kB	[overzicht]
hppa (unofficial port)	1.16.0-2	320,3 kB	461,0 kB	[overzicht]
ia64 (unofficial port)	1.16.0-2	332,4 kB	597,0 kB	[overzicht]
mips64el	1.16.0-2	308,7 kB	452,0 kB	[overzicht]
ppc64 (unofficial port)	1.16.0-2	316,9 kB	499,0 kB	[overzicht]
ppc64el	1.16.0-2	317,2 kB	497,0 kB	[overzicht]
riscv64	1.16.0-2+b1	312,3 kB	401,0 kB	[overzicht]
s390x	1.16.0-2	311,0 kB	444,0 kB	[overzicht]
sh4 (unofficial port)	1.16.0-2	332,8 kB	439,0 kB	[overzicht]
sparc64 (unofficial port)	1.15.5-1	307,6 kB	431,0 kB	[overzicht]
x32 (unofficial port)	1.16.0-2	316,0 kB	441,0 kB	[overzicht]