Package: r-cran-spp (1.16.0-2 and others)

[ Source: r-cran-spp  ]

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

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Download r-cran-spp

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.16.0-2	316.0 kB	473.0 kB	[list of files]
amd64	1.16.0-2	315.3 kB	453.0 kB	[list of files]
arm64	1.16.0-2+b1	315.1 kB	436.0 kB	[list of files]
hppa (unofficial port)	1.16.0-2	320.3 kB	461.0 kB	[list of files]
ia64 (unofficial port)	1.16.0-2	332.4 kB	597.0 kB	[list of files]
mips64el	1.16.0-2	308.7 kB	452.0 kB	[list of files]
ppc64 (unofficial port)	1.16.0-2	316.9 kB	499.0 kB	[list of files]
ppc64el	1.16.0-2	317.2 kB	497.0 kB	[list of files]
riscv64	1.16.0-2+b1	312.3 kB	401.0 kB	[list of files]
s390x	1.16.0-2	311.0 kB	444.0 kB	[list of files]
sh4 (unofficial port)	1.16.0-2	332.8 kB	439.0 kB	[list of files]
sparc64 (unofficial port)	1.15.5-1	307.6 kB	431.0 kB	[list of files]
x32 (unofficial port)	1.16.0-2	316.0 kB	441.0 kB	[list of files]