[ Bron: r-cran-spp ]
Pakket: r-cran-spp (1.15.5-1)
Verwijzigingen voor r-cran-spp
Debian bronnen:
Het bronpakket r-cran-spp downloaden:
Beheerders:
Externe bronnen:
- Homepage [cran.r-project.org]
Vergelijkbare pakketten:
GNU R ChIP-seq processing pipeline
R package for anlaysis of ChIP-seq and other functional sequencing data
* Assess overall DNA-binding signals in the data and select appropriate quality of tag alignment. * Discard or restrict positions with abnormally high number of tags. * Calculate genome-wide profiles of smoothed tag density and save them in WIG files for viewing in other browsers. * Calculate genome-wide profiles providing conservative statistical estimates of fold enrichment ratios along the genome. These can be exported for browser viewing, or thresholded to determine regions of significant enrichment/depletion. * Determine statistically significant point binding positions * Assess whether the set of point binding positions detected at a current sequencing depth meets saturation criteria, and if does not, estimate what sequencing depth would be required to do so.
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