Pakket: r-cran-seurat (5.2.1-4 en anderen)

[ Bron: r-cran-seurat  ]

Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

Andere aan r-cran-seurat gerelateerde pakketten

• dep: libc6 (>= 2.32) [x32]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.38) [niet alpha, ia64, x32]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 11) [x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [ia64]

  dep: libstdc++6 (>= 14) [niet ia64, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-cran-cluster

  GNU R package for cluster analysis by Rousseeuw et al

• dep: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• dep: r-cran-fastdummies [niet x32]

  fast creation of dummy columns and rows from categorical variables

• dep: r-cran-fitdistrplus

  support fit of parametric distribution

• dep: r-cran-future

  R package: A Future API for R

• dep: r-cran-future.apply

  apply function to elements in parallel using futures

• dep: r-cran-generics (>= 0.1.3) [niet x32]

  GNU R common S3 generics not provided by base R methods

• dep: r-cran-ggplot2 (>= 3.3.0)

  implementation of the Grammar of Graphics

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-ggridges

  Ridgeline Plots in 'ggplot2'

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-ica

  Independent Component Analysis

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-irlba

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• dep: r-cran-kernsmooth

  GNU R package for kernel smoothing and density estimation

• dep: r-cran-leiden (>= 0.3.1) [hppa, ia64, x32]

  GNU R implementation of Leiden clustering algorithm

• dep: r-cran-leidenbase [niet hppa, ia64, x32]

  GNU R and C/C++ Wrappers to Run the Leiden find_partition() Function

• dep: r-cran-lifecycle [niet x32]

  manage the life cycle of your GNU R package functions

• dep: r-cran-lmtest

  GNU R package for diagnostic checking in linear models

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix (>= 1.5-0)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-miniui

  Shiny UI Widgets for Small Screens

• dep: r-cran-patchwork

  GNU R the composer of plots

• dep: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• dep: r-cran-plotly (>= 4.9.0)

  create interactive web graphics via 'plotly.js' in GNU R

• dep: r-cran-png

  GNU R package to read and write PNG images

• dep: r-cran-progressr

  GNU R inclusive, unifying API for progress updates

• dep: r-cran-purrr [hppa, ia64]

  GNU R functional programming tools

• dep: r-cran-rann

  Fast Nearest Neighbour Search Using L2 Metric

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcpp (>= 1.0.7)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppannoy (>= 0.0.18)

  Rcpp bindings for Annoy (approximate nearest neighbors)

• dep: r-cran-rcppeigen

  GNU R package for Eigen templated linear algebra

• dep: r-cran-rcpphnsw [niet x32]

  R bindings for a Library for Approximate Nearest Neighbors

• dep: r-cran-rcppprogress

  interruptible progress bar for C++ in GNU R packages

• dep: r-cran-reticulate

  R interface to Python modules, classes, and functions

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rocr

  GNU R package to prepare and display ROC curves

• dep: r-cran-rspectra [niet x32]

  GNU R solvers for large-scale eigenvalue and SVD problems

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-scales

  Scale functions for visualization

• dep: r-cran-scattermore (>= 0.7) [x32]

  GNU R scatterplots with more points

  dep: r-cran-scattermore (>= 1.2) [niet x32]

• dep: r-cran-sctransform (>= 0.3.5) [x32]

  Variance Stabilizing Transformations for Single Cell UMI Data

  dep: r-cran-sctransform (>= 0.4.1) [niet x32]

• dep: r-cran-seuratobject (>= 4.1.3) [x32]

  GNU R data structures for single cell data

  dep: r-cran-seuratobject (>= 5.0.0) [ia64]

  dep: r-cran-seuratobject (>= 5.0.2) [niet ia64, x32]

• dep: r-cran-shiny

  GNU R web application framework

• dep: r-cran-spatstat.explore

  GNU R exploratory data analysis for the 'spatstat' family

• dep: r-cran-spatstat.geom

  GNU R geometrical functionality of the 'spatstat' package

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-uwot (>= 0.1.10) [niet x32]

  GNU R uniform manifold approximation and projection (UMAP)

  dep: r-cran-uwot (>= 0.1.14) [x32]

• rec: r-bioc-biobase [niet x32]

  base functions for Bioconductor

• rec: r-bioc-biocgenerics [niet x32]

  generic functions for Bioconductor

• rec: r-bioc-delayedarray [niet armel, armhf, i386, x32]

  BioConductor delayed operations on array-like objects

• rec: r-bioc-deseq2 [niet armel, armhf, i386, x32]

  R package for RNA-Seq Differential Expression Analysis

• rec: r-bioc-genomeinfodb [niet x32]

  BioConductor utilities for manipulating chromosome identifiers

• rec: r-bioc-genomicranges [niet armel, armhf, i386, x32]

  BioConductor representation and manipulation of genomic intervals

• rec: r-bioc-glmgampoi [niet armel, armhf, hppa, i386, ia64, x32]

  GNU R fit a Gamma-Poisson generalized linear model

• rec: r-bioc-iranges [niet armel, armhf, i386, x32]

  GNU R low-level containers for storing sets of integer ranges

• rec: r-bioc-limma [niet armel, armhf, i386, x32]

  linear models for microarray data

• rec: r-bioc-monocle [niet armel, armhf, i386, x32]

  clustering, differential expression, and trajectory analysis for RNA-Seq

• rec: r-bioc-rtracklayer [niet armel, armhf, i386, x32]

  GNU R interface to genome browsers and their annotation tracks

• rec: r-bioc-s4vectors [niet x32]

  BioConductor S4 implementation of vectors and lists

• rec: r-bioc-singlecellexperiment [niet x32]

  S4 Classes for Single Cell Data

• rec: r-bioc-summarizedexperiment [niet x32]

  BioConductor assay container

• rec: r-cran-ape [niet x32]

  GNU R package for Analyses of Phylogenetics and Evolution

• rec: r-cran-data.table [niet x32]

  GNU R extension of Data.frame

• rec: r-cran-ggrastr [niet x32]

  Bioconductor rasterize layers for 'ggplot2'

• rec: r-cran-hdf5r

  GNU R interface to the 'HDF5' binary data format

• rec: r-cran-metap [niet x32]

  Meta-Analysis of Significance Values

• rec: r-cran-mixtools [niet x32]

  GNU R tools for analyzing finite mixture models

• rec: r-cran-r.utils [niet x32]

  GNU R various programming utilities

• rec: r-cran-rsvd [niet x32]

  Randomized Singular Value Decomposition

• rec: r-cran-sf (>= 1.0-0) [niet hppa, ia64, x32]

  Simple Features for R

• rec: r-cran-testthat

  GNU R testsuite

• rec: r-cran-vgam [niet x32]

  GNU R package for estimating vector generalized additive models

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocgenerics

  generic functions for Bioconductor

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-monocle

  clustering, differential expression, and trajectory analysis for RNA-Seq

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• sug: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• sug: r-cran-data.table

  GNU R extension of Data.frame

• sug: r-cran-ggrastr

  Bioconductor rasterize layers for 'ggplot2'

• sug: r-cran-metap

  Meta-Analysis of Significance Values

• sug: r-cran-mixtools

  GNU R tools for analyzing finite mixture models

• sug: r-cran-r.utils

  GNU R various programming utilities

• sug: r-cran-rsvd

  Randomized Singular Value Decomposition

• sug: r-cran-vgam

  GNU R package for estimating vector generalized additive models

r-cran-seurat downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	5.2.1-4	3.180,8 kB	4.356,0 kB	[overzicht]
amd64	5.2.1-4	3.204,4 kB	4.330,0 kB	[overzicht]
arm64	5.2.1-4	3.182,8 kB	4.355,0 kB	[overzicht]
armel	5.2.1-4	3.177,6 kB	4.290,0 kB	[overzicht]
armhf	5.2.1-4	3.177,5 kB	4.226,0 kB	[overzicht]
hppa (unofficial port)	5.1.0-1	3.171,0 kB	4.309,0 kB	[overzicht]
i386	5.2.1-4	3.203,6 kB	4.321,0 kB	[overzicht]
ia64 (unofficial port)	5.0.1-1	3.484,1 kB	4.397,0 kB	[overzicht]
mips64el	5.2.1-4	3.176,1 kB	4.378,0 kB	[overzicht]
ppc64 (unofficial port)	5.2.1-4	3.201,1 kB	4.425,0 kB	[overzicht]
ppc64el	5.2.1-4	3.220,3 kB	4.483,0 kB	[overzicht]
riscv64	5.2.1-4	3.190,9 kB	4.210,0 kB	[overzicht]
s390x	5.2.1-4	3.200,7 kB	4.346,0 kB	[overzicht]
sparc64 (unofficial port)	5.2.1-4	3.164,6 kB	4.940,0 kB	[overzicht]
x32 (unofficial port)	4.3.0-1	2.990,8 kB	3.547,0 kB	[overzicht]