Pakket: r-cran-sctransform (0.4.1-1 en anderen)

[ Bron: r-cran-sctransform  ]

Variance Stabilizing Transformations for Single Cell UMI Data

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

Andere aan r-cran-sctransform gerelateerde pakketten

• dep: libblas3 [niet m68k, sh4]

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.29) [niet alpha, ia64, riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgcc1 (>= 1:3.0) [sh4]

  Pakket niet beschikbaar

• dep: libgcc2 (>= 4.2.1) [m68k]

  Pakket niet beschikbaar

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3 [niet m68k, sh4]

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 13.1) [niet arm64, m68k, sh4]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [arm64]

  dep: libstdc++6 (>= 5.2) [m68k, sh4]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-3.5 [m68k, sh4]

  Pakket niet beschikbaar

• dep: r-api-4.0 [niet m68k, sh4]

  virtueel pakket geboden door r-base-core

• dep: r-base-core (>= 3.6.2-2) [m68k, sh4]

  GNU R core of statistical computation and graphics system

• dep: r-cran-dplyr [niet m68k, sh4]

  GNU R grammar of data manipulation

• dep: r-cran-future [niet m68k, sh4]

  R package: A Future API for R

• dep: r-cran-future.apply [niet m68k, sh4]

  apply function to elements in parallel using futures

• dep: r-cran-ggplot2 [niet m68k, sh4]

  implementation of the Grammar of Graphics

• dep: r-cran-gridextra [niet m68k, sh4]

  GNU R package with extensions for the grid package

• dep: r-cran-magrittr [niet m68k, sh4]

  GNU R forward-pipe operator

• dep: r-cran-mass [niet m68k, sh4]

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix (>= 1.5-0) [niet m68k, sh4]

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-matrixstats [niet m68k, sh4]

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcpp (>= 0.11.0) [niet m68k, sh4]

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcpparmadillo [niet m68k, sh4]

  GNU R package for Armadillo C++ linear algebra library

• dep: r-cran-reshape2 [niet m68k, sh4]

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-rlang [niet m68k, sh4]

  Functions for Base Types and Core R and 'Tidyverse' Features

• rec: r-cran-irlba

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• rec: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• rec: r-cran-testthat

  GNU R testsuite

r-cran-sctransform downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.4.1-1	482,0 kB	827,0 kB	[overzicht]
amd64	0.4.1-1	487,7 kB	735,0 kB	[overzicht]
arm64	0.4.1-1+b1	468,1 kB	752,0 kB	[overzicht]
armel	0.4.1-1	478,2 kB	717,0 kB	[overzicht]
armhf	0.4.1-1	477,2 kB	661,0 kB	[overzicht]
hppa (unofficial port)	0.4.1-1	485,2 kB	757,0 kB	[overzicht]
i386	0.4.1-1	493,9 kB	753,0 kB	[overzicht]
ia64 (unofficial port)	0.4.1-1	503,2 kB	956,0 kB	[overzicht]
m68k (unofficial port)	0.2.1-1	293,7 kB	390,0 kB	[overzicht]
mips64el	0.4.1-1	473,5 kB	774,0 kB	[overzicht]
ppc64 (unofficial port)	0.4.1-1	486,4 kB	831,0 kB	[overzicht]
ppc64el	0.4.1-1	484,6 kB	828,0 kB	[overzicht]
riscv64	0.4.1-1+b1	486,0 kB	695,0 kB	[overzicht]
s390x	0.4.1-1	488,1 kB	751,0 kB	[overzicht]
sh4 (unofficial port)	0.2.1-1	297,4 kB	390,0 kB	[overzicht]
sparc64 (unofficial port)	0.4.1-1	470,3 kB	1.538,0 kB	[overzicht]
x32 (unofficial port)	0.4.1-1	487,7 kB	718,0 kB	[overzicht]