パッケージ: r-cran-seurat (5.1.0-1 など)

[ ソース: r-cran-seurat  ]

Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

その他の r-cran-seurat 関連パッケージ

• dep: libc6 (>= 2.32) [x32]

  GNU C ライブラリ: 共有ライブラリ
  以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb

  dep: libc6 (>= 2.38) [alpha, ia64, x32 以外]

• dep: libc6.1 (>= 2.32) [alpha]

  GNU C ライブラリ: 共有ライブラリ
  以下のパッケージによって提供される仮想パッケージでもあります: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC 共有ライブラリ

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 共有ライブラリ

• dep: libstdc++6 (>= 11) [x32]

  GNU 標準 C++ ライブラリ v3

  dep: libstdc++6 (>= 13.1) [alpha, ia64]

  dep: libstdc++6 (>= 14) [alpha, ia64, x32 以外]

• dep: libunwind8 [ia64]

  プログラムのコールチェーン測定ライブラリ - ランタイム版

• dep: r-api-4.0

  以下のパッケージによって提供される仮想パッケージです: r-base-core

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-cran-cluster

  Rousseeuw et al によるクラスタ分析用 GNU R パッケージ

• dep: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• dep: r-cran-fastdummies [x32 以外]

  fast creation of dummy columns and rows from categorical variables

• dep: r-cran-fitdistrplus

  support fit of parametric distribution

• dep: r-cran-future

  R package: A Future API for R

• dep: r-cran-future.apply

  apply function to elements in parallel using futures

• dep: r-cran-generics (>= 0.1.3) [x32 以外]

  GNU R common S3 generics not provided by base R methods

• dep: r-cran-ggplot2 (>= 3.3.0)

  implementation of the Grammar of Graphics

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-ggridges

  Ridgeline Plots in 'ggplot2'

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-ica

  Independent Component Analysis

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-irlba

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• dep: r-cran-kernsmooth

  カーネル型平滑化および密度関数推定のための GNU R パッケージ

• dep: r-cran-leiden (>= 0.3.1)

  GNU R implementation of Leiden clustering algorithm

• dep: r-cran-lifecycle [x32 以外]

  manage the life cycle of your GNU R package functions

• dep: r-cran-lmtest

  GNU R package for diagnostic checking in linear models

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix (>= 1.5-0)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-miniui

  Shiny UI Widgets for Small Screens

• dep: r-cran-patchwork

  GNU R the composer of plots

• dep: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• dep: r-cran-plotly (>= 4.9.0)

  create interactive web graphics via 'plotly.js' in GNU R

• dep: r-cran-png

  GNU R package to read and write PNG images

• dep: r-cran-progressr

  GNU R inclusive, unifying API for progress updates

• dep: r-cran-purrr [x32 以外]

  GNU R functional programming tools

• dep: r-cran-rann

  Fast Nearest Neighbour Search Using L2 Metric

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcpp (>= 1.0.7)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppannoy (>= 0.0.18)

  Rcpp bindings for Annoy (approximate nearest neighbors)

• dep: r-cran-rcppeigen

  GNU R package for Eigen templated linear algebra

• dep: r-cran-rcpphnsw [x32 以外]

  R bindings for a Library for Approximate Nearest Neighbors

• dep: r-cran-rcppprogress

  interruptible progress bar for C++ in GNU R packages

• dep: r-cran-reticulate

  R interface to Python modules, classes, and functions

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rocr

  ROC 曲線の準備と表示をする GNU Rパッケージ

• dep: r-cran-rspectra [x32 以外]

  GNU R solvers for large-scale eigenvalue and SVD problems

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-scales

  Scale functions for visualization

• dep: r-cran-scattermore (>= 0.7) [x32]

  GNU R scatterplots with more points

  dep: r-cran-scattermore (>= 1.2) [x32 以外]

• dep: r-cran-sctransform (>= 0.3.5) [x32]

  Variance Stabilizing Transformations for Single Cell UMI Data

  dep: r-cran-sctransform (>= 0.4.1) [x32 以外]

• dep: r-cran-seuratobject (>= 4.1.3) [x32]

  GNU R data structures for single cell data

  dep: r-cran-seuratobject (>= 5.0.0) [alpha, ia64]

  dep: r-cran-seuratobject (>= 5.0.2) [alpha, ia64, x32 以外]

• dep: r-cran-shiny

  GNU R ウェブアプリケーションフレームワーク

• dep: r-cran-spatstat.explore

  GNU R exploratory data analysis for the 'spatstat' family

• dep: r-cran-spatstat.geom

  GNU R geometrical functionality of the 'spatstat' package

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-uwot (>= 0.1.10) [x32 以外]

  GNU R uniform manifold approximation and projection (UMAP)

  dep: r-cran-uwot (>= 0.1.14) [x32]

• rec: r-bioc-biobase [x32 以外]

  base functions for Bioconductor

• rec: r-bioc-biocgenerics [x32 以外]

  generic functions for Bioconductor

• rec: r-bioc-delayedarray [armel, armhf, i386, x32 以外]

  BioConductor delayed operations on array-like objects

• rec: r-bioc-deseq2 [armel, armhf, i386, x32 以外]

  R package for RNA-Seq Differential Expression Analysis

• rec: r-bioc-genomeinfodb [x32 以外]

  BioConductor utilities for manipulating chromosome identifiers

• rec: r-bioc-genomicranges [armel, armhf, i386, x32 以外]

  BioConductor representation and manipulation of genomic intervals

• rec: r-bioc-iranges [armel, armhf, i386, x32 以外]

  GNU R low-level containers for storing sets of integer ranges

• rec: r-bioc-limma [armel, armhf, i386, x32 以外]

  linear models for microarray data

• rec: r-bioc-monocle [armel, armhf, i386, x32 以外]

  clustering, differential expression, and trajectory analysis for RNA-Seq

• rec: r-bioc-rtracklayer [armel, armhf, i386, x32 以外]

  GNU R interface to genome browsers and their annotation tracks

• rec: r-bioc-s4vectors [x32 以外]

  BioConductor S4 implementation of vectors and lists

• rec: r-bioc-singlecellexperiment [x32 以外]

  S4 Classes for Single Cell Data

• rec: r-bioc-summarizedexperiment [x32 以外]

  BioConductor assay container

• rec: r-cran-ape [x32 以外]

  GNU R package for Analyses of Phylogenetics and Evolution

• rec: r-cran-data.table [x32 以外]

  GNU R extension of Data.frame

• rec: r-cran-ggrastr [x32 以外]

  Bioconductor rasterize layers for 'ggplot2'

• rec: r-cran-hdf5r

  GNU R interface to the 'HDF5' binary data format

• rec: r-cran-metap [x32 以外]

  Meta-Analysis of Significance Values

• rec: r-cran-mixtools [x32 以外]

  GNU R tools for analyzing finite mixture models

• rec: r-cran-r.utils [x32 以外]

  GNU R various programming utilities

• rec: r-cran-rsvd [x32 以外]

  Randomized Singular Value Decomposition

• rec: r-cran-testthat

  GNU R testsuite

• rec: r-cran-vgam [x32 以外]

  GNU R package for estimating vector generalized additive models

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocgenerics

  generic functions for Bioconductor

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-monocle

  clustering, differential expression, and trajectory analysis for RNA-Seq

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• sug: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• sug: r-cran-data.table

  GNU R extension of Data.frame

• sug: r-cran-ggrastr

  Bioconductor rasterize layers for 'ggplot2'

• sug: r-cran-metap

  Meta-Analysis of Significance Values

• sug: r-cran-mixtools

  GNU R tools for analyzing finite mixture models

• sug: r-cran-r.utils

  GNU R various programming utilities

• sug: r-cran-rsvd

  Randomized Singular Value Decomposition

• sug: r-cran-vgam

  GNU R package for estimating vector generalized additive models

r-cran-seurat のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード

アーキテクチャ	バージョン	パッケージサイズ	インストールサイズ	ファイル
alpha (非公式の移植版)	5.0.1-1	3,448.8 kB	4,137.0 kB	[ファイル一覧]
amd64	5.1.0-1	3,184.1 kB	4,302.0 kB	[ファイル一覧]
arm64	5.1.0-1	3,164.0 kB	4,326.0 kB	[ファイル一覧]
armel	5.1.0-1	3,157.8 kB	4,241.0 kB	[ファイル一覧]
armhf	5.1.0-1	3,157.1 kB	4,137.0 kB	[ファイル一覧]
hppa (非公式の移植版)	5.1.0-1	3,171.0 kB	4,309.0 kB	[ファイル一覧]
i386	5.1.0-1	3,183.1 kB	4,293.0 kB	[ファイル一覧]
ia64 (非公式の移植版)	5.0.1-1	3,484.1 kB	4,397.0 kB	[ファイル一覧]
mips64el	5.1.0-1	3,153.1 kB	4,350.0 kB	[ファイル一覧]
ppc64 (非公式の移植版)	5.1.0-1	3,181.6 kB	4,393.0 kB	[ファイル一覧]
ppc64el	5.1.0-1	3,200.9 kB	4,454.0 kB	[ファイル一覧]
riscv64	5.1.0-1	3,172.1 kB	4,181.0 kB	[ファイル一覧]
s390x	5.1.0-1	3,181.5 kB	4,318.0 kB	[ファイル一覧]
sparc64 (非公式の移植版)	5.1.0-1	3,141.9 kB	4,908.0 kB	[ファイル一覧]
x32 (非公式の移植版)	4.3.0-1	2,990.8 kB	3,547.0 kB	[ファイル一覧]