Pakiet: r-cran-seurat (5.2.1-3 i inne)

[ Pakiet źródłowy: r-cran-seurat  ]

Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

Inne pakiety związane z r-cran-seurat

• dep: libc6 (>= 2.32) [x32]

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

  dep: libc6 (>= 2.38) [nie alpha, ia64, x32]

• dep: libc6.1 (>= 2.32) [alpha]

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  Biblioteka wspomagająca GCC

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  Biblioteka wspomagająca GCC

• dep: libstdc++6 (>= 11) [x32]

  Standardowa biblioteka GNU C++, wersja 3

  dep: libstdc++6 (>= 13.1) [alpha, ia64]

  dep: libstdc++6 (>= 14) [nie alpha, ia64, x32]

• dep: libunwind8 [ia64]

  Biblioteka do ustalania łańcucha wywołań programu - środowisko uruchomieniowe

• dep: r-api-4.0

  pakiet wirtualny udostępniany przez r-base-core

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-cran-cluster

  GNU R package for cluster analysis by Rousseeuw et al

• dep: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• dep: r-cran-fastdummies [nie x32]

  fast creation of dummy columns and rows from categorical variables

• dep: r-cran-fitdistrplus

  support fit of parametric distribution

• dep: r-cran-future

  R package: A Future API for R

• dep: r-cran-future.apply

  apply function to elements in parallel using futures

• dep: r-cran-generics (>= 0.1.3) [nie x32]

  GNU R common S3 generics not provided by base R methods

• dep: r-cran-ggplot2 (>= 3.3.0)

  implementation of the Grammar of Graphics

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-ggridges

  Ridgeline Plots in 'ggplot2'

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-ica

  Independent Component Analysis

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-irlba

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• dep: r-cran-kernsmooth

  GNU R package for kernel smoothing and density estimation

• dep: r-cran-leiden (>= 0.3.1) [alpha, hppa, ia64, x32]

  GNU R implementation of Leiden clustering algorithm

• dep: r-cran-leidenbase [nie alpha, hppa, ia64, x32]

  GNU R and C/C++ Wrappers to Run the Leiden find_partition() Function

• dep: r-cran-lifecycle [nie x32]

  manage the life cycle of your GNU R package functions

• dep: r-cran-lmtest

  Pakiet GNU R do kontroli diagnostycznej w modelach liniowych

• dep: r-cran-mass

  Pakiet MASS dla GNU R autorstwa Venablesa i Ripleya

• dep: r-cran-matrix (>= 1.5-0)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-miniui

  Shiny UI Widgets for Small Screens

• dep: r-cran-patchwork

  GNU R the composer of plots

• dep: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• dep: r-cran-plotly (>= 4.9.0)

  create interactive web graphics via 'plotly.js' in GNU R

• dep: r-cran-png

  GNU R package to read and write PNG images

• dep: r-cran-progressr

  GNU R inclusive, unifying API for progress updates

• dep: r-cran-purrr [alpha, hppa, ia64]

  GNU R functional programming tools

• dep: r-cran-rann

  Fast Nearest Neighbour Search Using L2 Metric

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcpp (>= 1.0.7)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppannoy (>= 0.0.18)

  Rcpp bindings for Annoy (approximate nearest neighbors)

• dep: r-cran-rcppeigen

  GNU R package for Eigen templated linear algebra

• dep: r-cran-rcpphnsw [nie x32]

  R bindings for a Library for Approximate Nearest Neighbors

• dep: r-cran-rcppprogress

  interruptible progress bar for C++ in GNU R packages

• dep: r-cran-reticulate

  R interface to Python modules, classes, and functions

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rocr

  GNU R package to prepare and display ROC curves

• dep: r-cran-rspectra [nie x32]

  GNU R solvers for large-scale eigenvalue and SVD problems

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-scales

  Scale functions for visualization

• dep: r-cran-scattermore (>= 0.7) [x32]

  GNU R scatterplots with more points

  dep: r-cran-scattermore (>= 1.2) [nie x32]

• dep: r-cran-sctransform (>= 0.3.5) [x32]

  Variance Stabilizing Transformations for Single Cell UMI Data

  dep: r-cran-sctransform (>= 0.4.1) [nie x32]

• dep: r-cran-seuratobject (>= 4.1.3) [x32]

  GNU R data structures for single cell data

  dep: r-cran-seuratobject (>= 5.0.0) [alpha, ia64]

  dep: r-cran-seuratobject (>= 5.0.2) [nie alpha, ia64, x32]

• dep: r-cran-shiny

  GNU R web application framework

• dep: r-cran-spatstat.explore

  GNU R exploratory data analysis for the 'spatstat' family

• dep: r-cran-spatstat.geom

  GNU R geometrical functionality of the 'spatstat' package

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-uwot (>= 0.1.10) [nie x32]

  GNU R uniform manifold approximation and projection (UMAP)

  dep: r-cran-uwot (>= 0.1.14) [x32]

• rec: r-bioc-biobase [nie x32]

  base functions for Bioconductor

• rec: r-bioc-biocgenerics [nie x32]

  generic functions for Bioconductor

• rec: r-bioc-delayedarray [nie armel, armhf, i386, x32]

  BioConductor delayed operations on array-like objects

• rec: r-bioc-deseq2 [nie armel, armhf, i386, x32]

  R package for RNA-Seq Differential Expression Analysis

• rec: r-bioc-genomeinfodb [nie x32]

  BioConductor utilities for manipulating chromosome identifiers

• rec: r-bioc-genomicranges [nie armel, armhf, i386, x32]

  BioConductor representation and manipulation of genomic intervals

• rec: r-bioc-glmgampoi [nie alpha, armel, armhf, hppa, i386, ia64, x32]

  GNU R fit a Gamma-Poisson generalized linear model

• rec: r-bioc-iranges [nie armel, armhf, i386, x32]

  GNU R low-level containers for storing sets of integer ranges

• rec: r-bioc-limma [nie armel, armhf, i386, x32]

  linear models for microarray data

• rec: r-bioc-monocle [nie armel, armhf, i386, x32]

  clustering, differential expression, and trajectory analysis for RNA-Seq

• rec: r-bioc-rtracklayer [nie armel, armhf, i386, x32]

  GNU R interface to genome browsers and their annotation tracks

• rec: r-bioc-s4vectors [nie x32]

  BioConductor S4 implementation of vectors and lists

• rec: r-bioc-singlecellexperiment [nie x32]

  S4 Classes for Single Cell Data

• rec: r-bioc-summarizedexperiment [nie x32]

  BioConductor assay container

• rec: r-cran-ape [nie x32]

  GNU R package for Analyses of Phylogenetics and Evolution

• rec: r-cran-data.table [nie x32]

  GNU R extension of Data.frame

• rec: r-cran-ggrastr [nie x32]

  Bioconductor rasterize layers for 'ggplot2'

• rec: r-cran-hdf5r

  GNU R interface to the 'HDF5' binary data format

• rec: r-cran-metap [nie x32]

  Meta-Analysis of Significance Values

• rec: r-cran-mixtools [nie x32]

  GNU R tools for analyzing finite mixture models

• rec: r-cran-r.utils [nie x32]

  GNU R various programming utilities

• rec: r-cran-rsvd [nie x32]

  Randomized Singular Value Decomposition

• rec: r-cran-sf (>= 1.0-0) [nie alpha, hppa, ia64, x32]

  Simple Features for R

• rec: r-cran-testthat

  GNU R testsuite

• rec: r-cran-vgam [nie x32]

  GNU R package for estimating vector generalized additive models

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocgenerics

  generic functions for Bioconductor

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-monocle

  clustering, differential expression, and trajectory analysis for RNA-Seq

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• sug: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• sug: r-cran-data.table

  GNU R extension of Data.frame

• sug: r-cran-ggrastr

  Bioconductor rasterize layers for 'ggplot2'

• sug: r-cran-metap

  Meta-Analysis of Significance Values

• sug: r-cran-mixtools

  GNU R tools for analyzing finite mixture models

• sug: r-cran-r.utils

  GNU R various programming utilities

• sug: r-cran-rsvd

  Randomized Singular Value Decomposition

• sug: r-cran-vgam

  GNU R package for estimating vector generalized additive models

Pobieranie r-cran-seurat

Pobierz dla wszystkich dostępnych architektur

Architektura	Wersja	Rozmiar pakietu	Rozmiar po instalacji	Pliki
alpha (port nieoficjalny)	5.0.1-1	3 448,8 KiB	4 137,0 KiB	[lista plików]
amd64	5.2.1-3	3 204,3 KiB	4 330,0 KiB	[lista plików]
arm64	5.2.1-3	3 182,8 KiB	4 355,0 KiB	[lista plików]
armel	5.2.1-3	3 177,6 KiB	4 290,0 KiB	[lista plików]
armhf	5.2.1-3	3 177,5 KiB	4 226,0 KiB	[lista plików]
hppa (port nieoficjalny)	5.1.0-1	3 171,0 KiB	4 309,0 KiB	[lista plików]
i386	5.2.1-3	3 203,5 KiB	4 321,0 KiB	[lista plików]
ia64 (port nieoficjalny)	5.0.1-1	3 484,1 KiB	4 397,0 KiB	[lista plików]
mips64el	5.2.1-3	3 175,8 KiB	4 378,0 KiB	[lista plików]
ppc64 (port nieoficjalny)	5.2.1-3	3 200,9 KiB	4 425,0 KiB	[lista plików]
ppc64el	5.2.1-3	3 220,1 KiB	4 483,0 KiB	[lista plików]
riscv64	5.2.1-3	3 190,8 KiB	4 210,0 KiB	[lista plików]
s390x	5.2.1-3	3 200,3 KiB	4 346,0 KiB	[lista plików]
sparc64 (port nieoficjalny)	5.2.1-3	3 164,4 KiB	4 940,0 KiB	[lista plików]
x32 (port nieoficjalny)	4.3.0-1	2 990,8 KiB	3 547,0 KiB	[lista plików]