[ Quellcode: r-bioc-genomicalignments ]
Paket: r-bioc-genomicalignments (1.40.0-1 und andere)
Links für r-bioc-genomicalignments
Debian-Ressourcen:
Quellcode-Paket r-bioc-genomicalignments herunterladen:
- [r-bioc-genomicalignments_1.40.0-1.dsc]
- [r-bioc-genomicalignments_1.40.0.orig.tar.gz]
- [r-bioc-genomicalignments_1.40.0-1.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [bioconductor.org]
Ähnliche Pakete:
BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
Andere Pakete mit Bezug zu r-bioc-genomicalignments
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-
- dep: libc6 (>= 2.16) [x32]
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.3) [hppa]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]
-
- dep: libc6.1 (>= 2.37) [ia64]
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6.1-udeb
- dep: libc6.1 (>= 2.4) [alpha]
-
- dep: r-api-3.4 [m68k]
- Paket nicht verfügbar
-
- dep: r-api-3.5 [sparc64]
- Paket nicht verfügbar
-
- dep: r-api-4.0 [nicht m68k, sparc64]
- virtuelles Paket, bereitgestellt durch r-base-core
-
- dep: r-api-bioc-3.16 [x32]
- Paket nicht verfügbar
-
- dep: r-api-bioc-3.18 [hppa, ia64, sh4]
- Paket nicht verfügbar
-
- dep: r-api-bioc-3.19 [nicht hppa, ia64, m68k, sh4, sparc64, x32]
- virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics
-
- dep: r-api-bioc-3.8 [sparc64]
- Paket nicht verfügbar
-
- dep: r-base-core (>= 3.4.3-1) [m68k]
- GNU R - System für statistische Berechnungen und Grafik - Kern
- dep: r-base-core (>= 3.5.2-1) [sparc64]
- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
-
- dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]
- generic functions for Bioconductor
- dep: r-bioc-biocgenerics (>= 0.37.0) [hppa, ia64, sh4, x32]
- dep: r-bioc-biocgenerics (>= 0.50.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-biocparallel [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor facilities for parallel evaluation
- dep: r-bioc-biocparallel (>= 1.38.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-biostrings (>= 2.37.1) [m68k]
- GNU R string objects representing biological sequences
- dep: r-bioc-biostrings (>= 2.47.6) [sparc64]
- dep: r-bioc-biostrings (>= 2.55.7) [hppa, ia64, sh4, x32]
- dep: r-bioc-biostrings (>= 2.72.1) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-genomeinfodb (>= 1.13.1) [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor utilities for manipulating chromosome identifiers
- dep: r-bioc-genomeinfodb (>= 1.40.1) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-genomicranges (>= 1.29.14) [m68k]
- BioConductor representation and manipulation of genomic intervals
- dep: r-bioc-genomicranges (>= 1.33.4) [sparc64]
- dep: r-bioc-genomicranges (>= 1.41.5) [hppa, ia64, sh4, x32]
- dep: r-bioc-genomicranges (>= 1.56.1) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-iranges (>= 2.11.16) [m68k]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.15.12) [sparc64]
- dep: r-bioc-iranges (>= 2.23.9) [hppa, ia64, sh4, x32]
- dep: r-bioc-iranges (>= 2.38.1) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-rsamtools (>= 1.21.4) [m68k]
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
- dep: r-bioc-rsamtools (>= 1.31.2) [hppa, ia64, sh4, sparc64, x32]
- dep: r-bioc-rsamtools (>= 2.20.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-s4vectors (>= 0.13.13) [m68k]
- BioConductor S4 implementation of vectors and lists
- dep: r-bioc-s4vectors (>= 0.19.11) [sparc64]
- dep: r-bioc-s4vectors (>= 0.27.12) [hppa, ia64, sh4, x32]
- dep: r-bioc-s4vectors (>= 0.42.1) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-summarizedexperiment (>= 1.34.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor assay container
- dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]
- dep: r-bioc-summarizedexperiment (>= 1.9.13) [hppa, ia64, sh4, sparc64, x32]
-
- rec: r-bioc-shortread (>= 1.24.0)
- GNU R classes and methods for high-throughput short-read sequencing data
-
- rec: r-cran-runit
- GNU-R-Paket, das ein Programmiergerüst für Komponententests bereitstellt
-
- sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]
- standard styles for vignettes and other Bioconductor documents
- sug: r-bioc-biocstyle (>= 2.32.1) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-bioc-bsgenome [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor infrastructure for Biostrings-based genome data packages
- sug: r-bioc-bsgenome (>= 1.72.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-bioc-deseq2 [hppa, ia64, sh4, x32]
- R package for RNA-Seq Differential Expression Analysis
- sug: r-bioc-deseq2 (>= 1.44.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-bioc-edger [hppa, ia64, m68k, sh4, x32]
- Empirische Analyse von digitalen Genexpressionsdaten mit R
- sug: r-bioc-edger (>= 4.2.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R tools for making and manipulating transcript centric annotations
- sug: r-bioc-genomicfeatures (>= 1.56.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-bioc-rtracklayer [hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R interface to genome browsers and their annotation tracks
- sug: r-bioc-rtracklayer (>= 1.64.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-bioc-shortread [hppa, ia64, m68k, sh4, x32]
- GNU R classes and methods for high-throughput short-read sequencing data
- sug: r-bioc-shortread (>= 1.62.0) [nicht hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-cran-knitr [nicht hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-runit [nicht sparc64]
- GNU-R-Paket, das ein Programmiergerüst für Komponententests bereitstellt
r-bioc-genomicalignments herunterladen
| Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|---|
| alpha (inoffizielle Portierung) | 1.40.0-1 | 2.109,1 kB | 3.447,0 kB | [Liste der Dateien] |
| amd64 | 1.40.0-1 | 2.109,8 kB | 3.391,0 kB | [Liste der Dateien] |
| arm64 | 1.40.0-1 | 2.109,3 kB | 3.447,0 kB | [Liste der Dateien] |
| hppa (inoffizielle Portierung) | 1.38.2-1 | 2.092,9 kB | 2.965,0 kB | [Liste der Dateien] |
| ia64 (inoffizielle Portierung) | 1.38.2-1 | 2.095,1 kB | 3.004,0 kB | [Liste der Dateien] |
| m68k (inoffizielle Portierung) | 1.14.0-1 | 1.648,5 kB | 2.183,0 kB | [Liste der Dateien] |
| mips64el | 1.40.0-1 | 2.107,1 kB | 3.453,0 kB | [Liste der Dateien] |
| ppc64 (inoffizielle Portierung) | 1.40.0-1 | 2.112,2 kB | 3.448,0 kB | [Liste der Dateien] |
| ppc64el | 1.40.0-1 | 2.111,0 kB | 3.447,0 kB | [Liste der Dateien] |
| riscv64 | 1.40.0-1 | 2.109,6 kB | 3.379,0 kB | [Liste der Dateien] |
| s390x | 1.40.0-1 | 2.109,0 kB | 3.391,0 kB | [Liste der Dateien] |
| sh4 (inoffizielle Portierung) | 1.38.2-1 | 2.091,9 kB | 2.955,0 kB | [Liste der Dateien] |
| sparc64 (inoffizielle Portierung) | 1.18.1-1 | 2.048,6 kB | 2.867,0 kB | [Liste der Dateien] |
| x32 (inoffizielle Portierung) | 1.34.0-1 | 2.063,0 kB | 2.904,0 kB | [Liste der Dateien] |