[ Pakiet źródłowy: r-bioc-genomicalignments ]
Pakiet: r-bioc-genomicalignments (1.40.0-1 i inne)
Odnośniki dla r-bioc-genomicalignments
Zasoby systemu Debian:
- Raporty o błędach
- Developer Information
- Dziennik zmian w systemie Debian
- Informacje nt. praw autorskich
- Śledzenie łatek systemu Debian
Pobieranie pakietu źródłowego r-bioc-genomicalignments:
- [r-bioc-genomicalignments_1.40.0-1.dsc]
- [r-bioc-genomicalignments_1.40.0.orig.tar.gz]
- [r-bioc-genomicalignments_1.40.0-1.debian.tar.xz]
Opiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [bioconductor.org]
Podobne pakiety:
BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
Inne pakiety związane z r-bioc-genomicalignments
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- dep: libc6 (>= 2.16) [x32]
- Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.3) [hppa]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]
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- dep: libc6.1 (>= 2.37) [ia64]
- Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6.1-udeb
- dep: libc6.1 (>= 2.4) [alpha]
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- dep: r-api-3.4 [m68k]
- Pakiet niedostępny
-
- dep: r-api-3.5 [sparc64]
- Pakiet niedostępny
-
- dep: r-api-4.0 [nie m68k, sparc64]
- pakiet wirtualny udostępniany przez r-base-core
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- dep: r-api-bioc-3.16 [x32]
- Pakiet niedostępny
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- dep: r-api-bioc-3.18 [hppa, ia64, sh4]
- Pakiet niedostępny
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- dep: r-api-bioc-3.19 [nie hppa, ia64, m68k, sh4, sparc64, x32]
- pakiet wirtualny udostępniany przez r-bioc-biocgenerics
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- dep: r-api-bioc-3.8 [sparc64]
- Pakiet niedostępny
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- dep: r-base-core (>= 3.4.3-1) [m68k]
- GNU R core of statistical computation and graphics system
- dep: r-base-core (>= 3.5.2-1) [sparc64]
- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
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- dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]
- generic functions for Bioconductor
- dep: r-bioc-biocgenerics (>= 0.37.0) [hppa, ia64, sh4, x32]
- dep: r-bioc-biocgenerics (>= 0.50.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-biocparallel [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor facilities for parallel evaluation
- dep: r-bioc-biocparallel (>= 1.38.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-biostrings (>= 2.37.1) [m68k]
- GNU R string objects representing biological sequences
- dep: r-bioc-biostrings (>= 2.47.6) [sparc64]
- dep: r-bioc-biostrings (>= 2.55.7) [hppa, ia64, sh4, x32]
- dep: r-bioc-biostrings (>= 2.72.1) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-genomeinfodb (>= 1.13.1) [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor utilities for manipulating chromosome identifiers
- dep: r-bioc-genomeinfodb (>= 1.40.1) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-genomicranges (>= 1.29.14) [m68k]
- BioConductor representation and manipulation of genomic intervals
- dep: r-bioc-genomicranges (>= 1.33.4) [sparc64]
- dep: r-bioc-genomicranges (>= 1.41.5) [hppa, ia64, sh4, x32]
- dep: r-bioc-genomicranges (>= 1.56.1) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-iranges (>= 2.11.16) [m68k]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.15.12) [sparc64]
- dep: r-bioc-iranges (>= 2.23.9) [hppa, ia64, sh4, x32]
- dep: r-bioc-iranges (>= 2.38.1) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-rsamtools (>= 1.21.4) [m68k]
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
- dep: r-bioc-rsamtools (>= 1.31.2) [hppa, ia64, sh4, sparc64, x32]
- dep: r-bioc-rsamtools (>= 2.20.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-s4vectors (>= 0.13.13) [m68k]
- BioConductor S4 implementation of vectors and lists
- dep: r-bioc-s4vectors (>= 0.19.11) [sparc64]
- dep: r-bioc-s4vectors (>= 0.27.12) [hppa, ia64, sh4, x32]
- dep: r-bioc-s4vectors (>= 0.42.1) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- dep: r-bioc-summarizedexperiment (>= 1.34.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor assay container
- dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]
- dep: r-bioc-summarizedexperiment (>= 1.9.13) [hppa, ia64, sh4, sparc64, x32]
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- rec: r-bioc-shortread (>= 1.24.0)
- GNU R classes and methods for high-throughput short-read sequencing data
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- rec: r-cran-runit
- GNU R package providing unit testing framework
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- sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]
- standard styles for vignettes and other Bioconductor documents
- sug: r-bioc-biocstyle (>= 2.32.1) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-bsgenome [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor infrastructure for Biostrings-based genome data packages
- sug: r-bioc-bsgenome (>= 1.72.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-deseq2 [hppa, ia64, sh4, x32]
- R package for RNA-Seq Differential Expression Analysis
- sug: r-bioc-deseq2 (>= 1.44.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-edger [hppa, ia64, m68k, sh4, x32]
- Empirical analysis of digital gene expression data in R
- sug: r-bioc-edger (>= 4.2.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R tools for making and manipulating transcript centric annotations
- sug: r-bioc-genomicfeatures (>= 1.56.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-rtracklayer [hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R interface to genome browsers and their annotation tracks
- sug: r-bioc-rtracklayer (>= 1.64.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-shortread [hppa, ia64, m68k, sh4, x32]
- GNU R classes and methods for high-throughput short-read sequencing data
- sug: r-bioc-shortread (>= 1.62.0) [nie hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-cran-knitr [nie hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-runit [nie sparc64]
- GNU R package providing unit testing framework
Pobieranie r-bioc-genomicalignments
Architektura | Wersja | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
---|---|---|---|---|
alpha (port nieoficjalny) | 1.40.0-1 | 2 109,1 KiB | 3 447,0 KiB | [lista plików] |
amd64 | 1.40.0-1 | 2 109,8 KiB | 3 391,0 KiB | [lista plików] |
arm64 | 1.40.0-1 | 2 109,3 KiB | 3 447,0 KiB | [lista plików] |
hppa (port nieoficjalny) | 1.38.2-1 | 2 092,9 KiB | 2 965,0 KiB | [lista plików] |
ia64 (port nieoficjalny) | 1.38.2-1 | 2 095,1 KiB | 3 004,0 KiB | [lista plików] |
m68k (port nieoficjalny) | 1.14.0-1 | 1 648,5 KiB | 2 183,0 KiB | [lista plików] |
mips64el | 1.40.0-1 | 2 107,1 KiB | 3 453,0 KiB | [lista plików] |
ppc64 (port nieoficjalny) | 1.40.0-1 | 2 112,2 KiB | 3 448,0 KiB | [lista plików] |
ppc64el | 1.40.0-1 | 2 111,0 KiB | 3 447,0 KiB | [lista plików] |
riscv64 | 1.40.0-1 | 2 109,6 KiB | 3 379,0 KiB | [lista plików] |
s390x | 1.40.0-1 | 2 109,0 KiB | 3 391,0 KiB | [lista plików] |
sh4 (port nieoficjalny) | 1.38.2-1 | 2 091,9 KiB | 2 955,0 KiB | [lista plików] |
sparc64 (port nieoficjalny) | 1.18.1-1 | 2 048,6 KiB | 2 867,0 KiB | [lista plików] |
x32 (port nieoficjalny) | 1.34.0-1 | 2 063,0 KiB | 2 904,0 KiB | [lista plików] |