Pakket: miniasm (0.3+dfsg-4 en anderen)

[ Bron: miniasm  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

Andere aan miniasm gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.35) [sh4]

• dep: libc6.1 (>= 2.27) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.35) [ia64]

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

miniasm downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.3+dfsg-4	31,2 kB	83,0 kB	[overzicht]
amd64	0.3+dfsg-4	29,2 kB	71,0 kB	[overzicht]
arm64	0.3+dfsg-4+b1	27,2 kB	84,0 kB	[overzicht]
armel	0.3+dfsg-4	27,7 kB	82,0 kB	[overzicht]
armhf	0.3+dfsg-4	26,3 kB	82,0 kB	[overzicht]
hppa (unofficial port)	0.3+dfsg-4	29,3 kB	67,0 kB	[overzicht]
i386	0.3+dfsg-4	31,2 kB	78,0 kB	[overzicht]
ia64 (unofficial port)	0.3+dfsg-4	38,2 kB	113,0 kB	[overzicht]
m68k (unofficial port)	0.3+dfsg-4	25,9 kB	66,0 kB	[overzicht]
mips64el	0.3+dfsg-4	29,7 kB	86,0 kB	[overzicht]
ppc64 (unofficial port)	0.3+dfsg-4	32,3 kB	147,0 kB	[overzicht]
ppc64el	0.3+dfsg-4	31,9 kB	83,0 kB	[overzicht]
riscv64	0.3+dfsg-4+b1	29,9 kB	60,0 kB	[overzicht]
s390x	0.3+dfsg-4	28,4 kB	70,0 kB	[overzicht]
sh4 (unofficial port)	0.3+dfsg-4	29,0 kB	82,0 kB	[overzicht]
sparc64 (unofficial port)	0.3+dfsg-4	26,4 kB	1.044,0 kB	[overzicht]
x32 (unofficial port)	0.3+dfsg-4	29,0 kB	70,0 kB	[overzicht]