Package: tophat (2.1.1+dfsg1-2 and others)

[ Source: tophat  ]

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

Other Packages Related to tophat

• dep: bowtie2

  ultrafast memory-efficient short read aligner

  or bowtie

  초고속 메모리 효율적인 짧은 읽기 정렬기

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libboost-thread1.67.0

  portable C++ multi-threading

• dep: libc6 (>= 2.15) [amd64]

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

• dep: libgcc1 (>= 1:3.0)

  GCC 기능 지원 라이브러리

• dep: libstdc++6 (>= 5.2)

  GNU 표준 C++ 라이브러리 v3

• dep: python

  대화형 고급 객체 지향 언어 (파이선2 버젼)

• dep: samtools (>= 1.5)

  SAM, BAM, CRAM 형식에서 시퀀스 정렬 처리

• dep: zlib1g (>= 1:1.2.3.3)

  압축 라이브러리 - 런타임

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

Download tophat

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	2.1.1+dfsg1-2+b1	654.2 kB	3,832.0 kB	[list of files]
arm64	2.1.1+dfsg1-2+b1	591.7 kB	3,567.0 kB	[list of files]