Pakket: tophat (2.1.1+dfsg1-2 en anderen)

[ Bron: tophat  ]

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

Andere aan tophat gerelateerde pakketten

• dep: bowtie2

  ultrafast memory-efficient short read aligner

  of bowtie

  Ultrafast memory-efficient short read aligner

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libboost-thread1.67.0

  portable C++ multi-threading

• dep: libc6 (>= 2.15) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

• dep: libgcc1 (>= 1:3.0)

  GCC support bibliotheek

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: samtools (>= 1.5)

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

tophat downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.1.1+dfsg1-2+b1	654,2 kB	3.832,0 kB	[overzicht]
arm64	2.1.1+dfsg1-2+b1	591,7 kB	3.567,0 kB	[overzicht]