Package: tophat (2.1.1+dfsg1-2 and others)

[ Source: tophat  ]

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

Other Packages Related to tophat

• dep: bowtie2

  ultrafast memory-efficient short read aligner

  or bowtie

  Ultrafast memory-efficient short read aligner

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libboost-thread1.67.0

  portable C++ multi-threading

• dep: libc6 (>= 2.15) [amd64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

• dep: libgcc1 (>= 1:3.0)

  GCC támogató programkönyvtár

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: samtools (>= 1.5)

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.3.3)

  tömörítő könyvtár - futásidejű

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

Download tophat

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	2.1.1+dfsg1-2+b1	654.2 kB	3,832.0 kB	[list of files]
arm64	2.1.1+dfsg1-2+b1	591.7 kB	3,567.0 kB	[list of files]