Paketti: tophat (2.1.1+dfsg1-2 ja muut)

[ Source: tophat  ]

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

Muut pakettiin tophat liittyvät paketit

• dep: bowtie2

  ultrafast memory-efficient short read aligner

  tai bowtie

  Ultrafast memory-efficient short read aligner

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libboost-thread1.67.0

  portable C++ multi-threading

• dep: libc6 (>= 2.15) [amd64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

• dep: libgcc1 (>= 1:3.0)

  GCC:n apukirjasto

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: samtools (>= 1.5)

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.3.3)

  pakkauskirjaston ajonaikaistiedostot

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

Imuroi tophat

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.1.1+dfsg1-2+b1	654.2 kt	3,832.0 kt	[tiedostoluettelo]
arm64	2.1.1+dfsg1-2+b1	591.7 kt	3,567.0 kt	[tiedostoluettelo]