Package: r-bioc-grohmm (1.40.3-2 and others)

[ Source: r-bioc-grohmm  ]

GRO-seq Analysis Pipeline

This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).

The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.

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Download r-bioc-grohmm

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.40.3-2	4,350.6 kB	4,529.0 kB	[list of files]
amd64	1.40.3-2	4,350.3 kB	4,521.0 kB	[list of files]
arm64	1.40.3-2	4,348.4 kB	4,529.0 kB	[list of files]
hppa (unofficial port)	1.36.0-1	4,343.5 kB	4,516.0 kB	[list of files]
ia64 (unofficial port)	1.36.0-1	4,349.2 kB	4,558.0 kB	[list of files]
mips64el	1.40.3-2	4,348.4 kB	4,532.0 kB	[list of files]
ppc64 (unofficial port)	1.40.3-2	4,354.0 kB	4,594.0 kB	[list of files]
ppc64el	1.40.3-2	4,353.9 kB	4,529.0 kB	[list of files]
riscv64	1.40.3-2	4,349.9 kB	4,505.0 kB	[list of files]
s390x	1.40.3-2	4,351.5 kB	4,521.0 kB	[list of files]
sh4 (unofficial port)	1.36.0-1	4,344.3 kB	4,522.0 kB	[list of files]
x32 (unofficial port)	1.32.0-1	4,332.9 kB	4,498.0 kB	[list of files]