Package: maffilter (1.3.1+dfsg-1 and others)

[ Source: maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Other Packages Related to maffilter

• dep: libboost-iostreams1.67.0

  Boost.Iostreams Library

• dep: libboost-regex1.67.0 (>= 1.67.0-10)

  regular expression library for C++

• dep: libbpp-core4 [not amd64]

  Bio++ Core library

  dep: libbpp-core4 (>= 2.4.1) [amd64]

• dep: libbpp-phyl-omics3 (>= 2.4.1)

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• dep: libbpp-phyl12 [not amd64]

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  dep: libbpp-phyl12 (>= 2.4.1) [amd64]

• dep: libbpp-seq-omics3 [not amd64]

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  dep: libbpp-seq-omics3 (>= 2.4.1) [amd64]

• dep: libbpp-seq12 [not amd64]

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  dep: libbpp-seq12 (>= 2.4.1) [amd64]

• dep: libbz2-1.0

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• dep: libc6 (>= 2.1.3) [i386]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf]

• dep: libgcc1 (>= 1:3.0) [not armhf]

  GCC támogató programkönyvtár

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

Download maffilter

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.3.1+dfsg-1+b1	210.3 kB	847.0 kB	[list of files]
arm64	1.3.1+dfsg-1+b1	189.9 kB	795.0 kB	[list of files]
armhf	1.3.1+dfsg-1+b1	179.7 kB	554.0 kB	[list of files]
i386	1.3.1+dfsg-1+b1	213.4 kB	806.0 kB	[list of files]