Paketti: r-bioc-rsamtools (2.6.0-1)

[ Source: r-bioc-rsamtools  ]

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Muut pakettiin r-bioc-rsamtools liittyvät paketit

• dep: libc6 (>= 2.15) [ei arm64, ppc64el]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

• dep: libcurl4 (>= 7.18.0)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgcc-s1 (>= 3.0) [ei armel, armhf, i386, mipsel]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.12

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.25.1)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.1.3)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rhtslib (>= 1.17.7)

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-s4vectors (>= 0.17.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.19.7)

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-bitops

  GNU R package implementing bitwise operations

• rec: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

Imuroi r-bioc-rsamtools

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	3,573.5 kt	5,515.0 kt	[tiedostoluettelo]
arm64	3,540.4 kt	5,471.0 kt	[tiedostoluettelo]
armel	3,509.2 kt	5,372.0 kt	[tiedostoluettelo]
armhf	3,517.2 kt	5,168.0 kt	[tiedostoluettelo]
i386	3,603.3 kt	5,603.0 kt	[tiedostoluettelo]
mips64el	3,539.3 kt	5,636.0 kt	[tiedostoluettelo]
mipsel	3,542.2 kt	5,575.0 kt	[tiedostoluettelo]
ppc64el	3,609.6 kt	5,847.0 kt	[tiedostoluettelo]
s390x	3,543.7 kt	5,583.0 kt	[tiedostoluettelo]