Package: bedtools (2.31.1+dfsg-2 and others)

Links for bedtools

Debian Resources:

Download Source Package bedtools:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [github.com]

Similar packages:

suite of utilities for comparing genomic features

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distributed in the filo package.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Suite, Purpose: use::analysing, use::comparing, Data Conversion, use::filtering, works-with::biological-sequence

Other Packages Related to bedtools

depends

recommends

suggests

enhances

dep: libbz2-1.0 [not sparc64]

biblioteca de compresión de archivos de alta calidad y ordenamiento de bloques, ejecutables
dep: libc6 (>= 2.23) [sparc64]

Biblioteca de C de GNU: Bibliotecas compartidas
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.34) [not alpha, arm64, ia64, sh4, sparc64]

dep: libc6 (>= 2.37) [sh4]

dep: libc6 (>= 2.38) [arm64]
dep: libc6.1 (>= 2.34) [alpha]

Biblioteca de C de GNU: Bibliotecas compartidas
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [amd64, s390x, x32]

Biblioteca de ayuda de GCC

dep: libgcc-s1 (>= 3.4) [alpha]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [arm64, ia64, mips64el, ppc64, ppc64el, riscv64, sh4]

dep: libgcc-s1 (>= 7) [i386]
dep: libgcc-s2 (>= 4.2.1) [m68k]

Biblioteca de ayuda de GCC
dep: libgcc-s4 (>= 4.1.1) [hppa]

Biblioteca de ayuda de GCC
dep: libgcc1 (>= 1:3.4) [sparc64]

Package not available
dep: liblzma5 (>= 5.1.1alpha+20120614) [not sparc64]

Biblioteca de compresión del formato XZ
dep: libstdc++6 (>= 13.1) [not sparc64]

biblioteca estándar de C++ de GNU v3

dep: libstdc++6 (>= 5.2) [sparc64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: zlib1g (>= 1:1.1.4) [not sparc64]

Biblioteca de compresión, ejecutables

dep: zlib1g (>= 1:1.2.3.3) [sparc64]

Download bedtools

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.31.1+dfsg-2	608.1 kB	2,458.0 kB	[list of files]
amd64	2.31.1+dfsg-2	661.8 kB	2,106.0 kB	[list of files]
arm64	2.31.1+dfsg-2+b1	586.6 kB	2,007.0 kB	[list of files]
armel	2.31.1+dfsg-2	547.2 kB	1,817.0 kB	[list of files]
armhf	2.31.1+dfsg-2	564.5 kB	1,313.0 kB	[list of files]
hppa (unofficial port)	2.31.1+dfsg-2	621.0 kB	1,976.0 kB	[list of files]
i386	2.31.1+dfsg-2	727.9 kB	2,301.0 kB	[list of files]
ia64 (unofficial port)	2.31.1+dfsg-2	796.8 kB	4,272.0 kB	[list of files]
m68k (unofficial port)	2.31.1+dfsg-2	623.5 kB	2,045.0 kB	[list of files]
mips64el	2.31.1+dfsg-2	582.9 kB	2,599.0 kB	[list of files]
ppc64 (unofficial port)	2.31.1+dfsg-2	658.7 kB	2,710.0 kB	[list of files]
ppc64el	2.31.1+dfsg-2	664.1 kB	2,518.0 kB	[list of files]
riscv64	2.31.1+dfsg-2+b2	644.0 kB	1,603.0 kB	[list of files]
s390x	2.31.1+dfsg-2	646.6 kB	2,162.0 kB	[list of files]
sh4 (unofficial port)	2.31.1+dfsg-2	752.8 kB	1,942.0 kB	[list of files]
sparc64 (unofficial port)	2.26.0+dfsg-5	460.9 kB	1,898.0 kB	[list of files]
x32 (unofficial port)	2.31.1+dfsg-2	665.9 kB	2,001.0 kB	[list of files]